miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29444 5' -61.5 NC_006151.1 + 113201 0.66 0.670441
Target:  5'- cGCAGacggacGCCGCCGAgGAGCgCCG-GCaCCGc -3'
miRNA:   3'- -CGUC------CGGUGGCU-CUCG-GGCuCGaGGU- -5'
29444 5' -61.5 NC_006151.1 + 91553 0.66 0.670441
Target:  5'- uGCGcGGCCAgCGGGGcgauggcggcgcGCgCGuGCUCCAg -3'
miRNA:   3'- -CGU-CCGGUgGCUCU------------CGgGCuCGAGGU- -5'
29444 5' -61.5 NC_006151.1 + 3108 0.66 0.670441
Target:  5'- -gAGGCCGCCGc-GGCgCGGGUcCCAg -3'
miRNA:   3'- cgUCCGGUGGCucUCGgGCUCGaGGU- -5'
29444 5' -61.5 NC_006151.1 + 2195 0.66 0.670441
Target:  5'- -gAGGCCcCCGcGGGCCggUGGGuCUCCAc -3'
miRNA:   3'- cgUCCGGuGGCuCUCGG--GCUC-GAGGU- -5'
29444 5' -61.5 NC_006151.1 + 102027 0.66 0.660538
Target:  5'- gGCuucGCCGuCCGGGAGCUgGAGCUggccCCGc -3'
miRNA:   3'- -CGuc-CGGU-GGCUCUCGGgCUCGA----GGU- -5'
29444 5' -61.5 NC_006151.1 + 137785 0.66 0.660538
Target:  5'- aGCAGGCCguGCUGcuGGAGCgggacuucaUCGAGC-CCAu -3'
miRNA:   3'- -CGUCCGG--UGGC--UCUCG---------GGCUCGaGGU- -5'
29444 5' -61.5 NC_006151.1 + 101645 0.66 0.660538
Target:  5'- aGUucGCCGCCGu--GCCCGcGCUCUAc -3'
miRNA:   3'- -CGucCGGUGGCucuCGGGCuCGAGGU- -5'
29444 5' -61.5 NC_006151.1 + 134756 0.66 0.659547
Target:  5'- aGCAGcGCgCGC--GGGGCCCGcggcuucGGCUCCAc -3'
miRNA:   3'- -CGUC-CG-GUGgcUCUCGGGC-------UCGAGGU- -5'
29444 5' -61.5 NC_006151.1 + 40069 0.66 0.650614
Target:  5'- --cGGCC-CgCGGGGGCCuCGGGCgCCGg -3'
miRNA:   3'- cguCCGGuG-GCUCUCGG-GCUCGaGGU- -5'
29444 5' -61.5 NC_006151.1 + 91139 0.66 0.650614
Target:  5'- aGCuuGGCCACCuGGGGGCgCGAGagcgUCAg -3'
miRNA:   3'- -CGu-CCGGUGG-CUCUCGgGCUCga--GGU- -5'
29444 5' -61.5 NC_006151.1 + 129921 0.66 0.650614
Target:  5'- --cGGCguCCGAGAGCgCGAuGCUgcCCAg -3'
miRNA:   3'- cguCCGguGGCUCUCGgGCU-CGA--GGU- -5'
29444 5' -61.5 NC_006151.1 + 139190 0.66 0.650614
Target:  5'- uGCuGGCgGUCGGGGcGCUgGAGCUCCu -3'
miRNA:   3'- -CGuCCGgUGGCUCU-CGGgCUCGAGGu -5'
29444 5' -61.5 NC_006151.1 + 53761 0.66 0.649621
Target:  5'- aGUAcGCCGCCGAGAGCuuGGcguagacGUUCUg -3'
miRNA:   3'- -CGUcCGGUGGCUCUCGggCU-------CGAGGu -5'
29444 5' -61.5 NC_006151.1 + 36567 0.66 0.648628
Target:  5'- cGguGGCCGCagcgccggcacggCGGGGGCCCGcuuccccAGcCUCCc -3'
miRNA:   3'- -CguCCGGUG-------------GCUCUCGGGC-------UC-GAGGu -5'
29444 5' -61.5 NC_006151.1 + 5940 0.66 0.640676
Target:  5'- aGCcGGCCcgggACCG-GGGCCCGAGgaCgAg -3'
miRNA:   3'- -CGuCCGG----UGGCuCUCGGGCUCgaGgU- -5'
29444 5' -61.5 NC_006151.1 + 646 0.66 0.640676
Target:  5'- cGCcGGCUuCCGGGgcgcGGCCggggCGGGCUCCGc -3'
miRNA:   3'- -CGuCCGGuGGCUC----UCGG----GCUCGAGGU- -5'
29444 5' -61.5 NC_006151.1 + 86086 0.66 0.639682
Target:  5'- cGCGcGCCGCCGccgccauGGGGCCCGuGUacgugUCCGg -3'
miRNA:   3'- -CGUcCGGUGGC-------UCUCGGGCuCG-----AGGU- -5'
29444 5' -61.5 NC_006151.1 + 124686 0.66 0.63471
Target:  5'- aGgGGGcCCACgGGGAgcacaucggcuacgcGCCCGGGCgcuUCCAg -3'
miRNA:   3'- -CgUCC-GGUGgCUCU---------------CGGGCUCG---AGGU- -5'
29444 5' -61.5 NC_006151.1 + 95060 0.66 0.630732
Target:  5'- cGCAGGCCGCgcuCGcAGAGCUCcacgcuGGCgUCCAu -3'
miRNA:   3'- -CGUCCGGUG---GC-UCUCGGGc-----UCG-AGGU- -5'
29444 5' -61.5 NC_006151.1 + 58754 0.66 0.630732
Target:  5'- cGC-GGCCACCGc-GGCCgcCGAGCccgUCCAc -3'
miRNA:   3'- -CGuCCGGUGGCucUCGG--GCUCG---AGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.