miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29445 3' -53.4 NC_006151.1 + 75094 0.66 0.967257
Target:  5'- -aGGCGcAGGUCgGCGUugCCGGGc-GCCa -3'
miRNA:   3'- uaCUGCuUCCAG-UGCA--GGUCCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 37575 0.66 0.967257
Target:  5'- -cGGCG-AGGcCAUGUCCuGGcUGCa -3'
miRNA:   3'- uaCUGCuUCCaGUGCAGGuCCaACGg -5'
29445 3' -53.4 NC_006151.1 + 130947 0.66 0.967257
Target:  5'- -cGGCGggGGgucgCGCGggCGcGGggGCCg -3'
miRNA:   3'- uaCUGCuuCCa---GUGCagGU-CCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 89694 0.66 0.966291
Target:  5'- -aGACGGccGcCGCGUCCAGGaacccggcggcgccgGCCg -3'
miRNA:   3'- uaCUGCUucCaGUGCAGGUCCaa-------------CGG- -5'
29445 3' -53.4 NC_006151.1 + 21433 0.66 0.96396
Target:  5'- ---uCGggGGUCGCGgcgUgGGGUgGCCc -3'
miRNA:   3'- uacuGCuuCCAGUGCa--GgUCCAaCGG- -5'
29445 3' -53.4 NC_006151.1 + 16535 0.66 0.960438
Target:  5'- -gGACGGAGG-CGUGUCauCGGGU-GCCa -3'
miRNA:   3'- uaCUGCUUCCaGUGCAG--GUCCAaCGG- -5'
29445 3' -53.4 NC_006151.1 + 16776 0.66 0.960438
Target:  5'- -gGACGGAGG-CGUGUCauCGGGU-GCCa -3'
miRNA:   3'- uaCUGCUUCCaGUGCAG--GUCCAaCGG- -5'
29445 3' -53.4 NC_006151.1 + 59886 0.66 0.960438
Target:  5'- cUGGCGAAGG---CGUCCAGGcgcGCg -3'
miRNA:   3'- uACUGCUUCCaguGCAGGUCCaa-CGg -5'
29445 3' -53.4 NC_006151.1 + 72104 0.66 0.960438
Target:  5'- -gGGCGAgcggcAGcGUCAUGgggaagcgcagcUCCAGGUUGgCCg -3'
miRNA:   3'- uaCUGCU-----UC-CAGUGC------------AGGUCCAAC-GG- -5'
29445 3' -53.4 NC_006151.1 + 4102 0.66 0.956685
Target:  5'- -cGACGAGGG-CGacagaGUCCGcGGccUGCCg -3'
miRNA:   3'- uaCUGCUUCCaGUg----CAGGU-CCa-ACGG- -5'
29445 3' -53.4 NC_006151.1 + 23905 0.66 0.956685
Target:  5'- -gGGCGucGGUCGCGggcccgaCGGGccGCCg -3'
miRNA:   3'- uaCUGCuuCCAGUGCag-----GUCCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 81150 0.66 0.952697
Target:  5'- cUGACGAuGGcgagCACGagCGGGUUGgCg -3'
miRNA:   3'- uACUGCUuCCa---GUGCagGUCCAACgG- -5'
29445 3' -53.4 NC_006151.1 + 23773 0.66 0.952697
Target:  5'- -aGGCGAcGGUCACGUUgaCGGGgu-CCg -3'
miRNA:   3'- uaCUGCUuCCAGUGCAG--GUCCaacGG- -5'
29445 3' -53.4 NC_006151.1 + 60403 0.67 0.950189
Target:  5'- -aGACGAGGGcgcgCacggcccagcggcccACGUCCucGGGggGCCg -3'
miRNA:   3'- uaCUGCUUCCa---G---------------UGCAGG--UCCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 52607 0.67 0.948469
Target:  5'- -gGACGAAGG-CGuCGUCgcgCAGGacgGCCg -3'
miRNA:   3'- uaCUGCUUCCaGU-GCAG---GUCCaa-CGG- -5'
29445 3' -53.4 NC_006151.1 + 127387 0.67 0.948033
Target:  5'- gGUGGCGggGGcCGCGgCCGagucgacGGgaGCCc -3'
miRNA:   3'- -UACUGCuuCCaGUGCaGGU-------CCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 81691 0.67 0.947153
Target:  5'- -cGGCGAcGGUCGCccgcgcgagguccagCCGGGgcGCCg -3'
miRNA:   3'- uaCUGCUuCCAGUGca-------------GGUCCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 41873 0.67 0.943998
Target:  5'- -gGAgGAgcccGGcGUCACGUCCGGGgaagcgGUCa -3'
miRNA:   3'- uaCUgCU----UC-CAGUGCAGGUCCaa----CGG- -5'
29445 3' -53.4 NC_006151.1 + 22550 0.67 0.943998
Target:  5'- -aGGCGGAGGcCACGUggcGGUaGCCg -3'
miRNA:   3'- uaCUGCUUCCaGUGCAgguCCAaCGG- -5'
29445 3' -53.4 NC_006151.1 + 4012 0.67 0.938795
Target:  5'- -gGGCGAagaGGGcCGCGgcguaggUCCAGGcgGCCu -3'
miRNA:   3'- uaCUGCU---UCCaGUGC-------AGGUCCaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.