miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29445 3' -53.4 NC_006151.1 + 75498 1.09 0.004499
Target:  5'- cAUGACGAAGGUCACGUCCAGGUUGCCc -3'
miRNA:   3'- -UACUGCUUCCAGUGCAGGUCCAACGG- -5'
29445 3' -53.4 NC_006151.1 + 83655 0.82 0.262371
Target:  5'- cGUGACGAGGGcCGCGUCCuccucgcucAGGcUGCCg -3'
miRNA:   3'- -UACUGCUUCCaGUGCAGG---------UCCaACGG- -5'
29445 3' -53.4 NC_006151.1 + 60298 0.79 0.364456
Target:  5'- -aGACGGAGGcCAUGUCCGGGccgUGCg -3'
miRNA:   3'- uaCUGCUUCCaGUGCAGGUCCa--ACGg -5'
29445 3' -53.4 NC_006151.1 + 128375 0.78 0.415895
Target:  5'- gGUGcACGAAGGUCACGaggUCCAcGGcgGCCa -3'
miRNA:   3'- -UAC-UGCUUCCAGUGC---AGGU-CCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 115090 0.78 0.424891
Target:  5'- cAUGACGAAgucGGcCACGUCCAGGccggcGCCg -3'
miRNA:   3'- -UACUGCUU---CCaGUGCAGGUCCaa---CGG- -5'
29445 3' -53.4 NC_006151.1 + 65243 0.75 0.561318
Target:  5'- gAUGACGGccGUCACGaCCAuGUUGCCg -3'
miRNA:   3'- -UACUGCUucCAGUGCaGGUcCAACGG- -5'
29445 3' -53.4 NC_006151.1 + 73343 0.75 0.571629
Target:  5'- cGUGGCGAagAGGUUcuGCGg-CAGGUUGCCc -3'
miRNA:   3'- -UACUGCU--UCCAG--UGCagGUCCAACGG- -5'
29445 3' -53.4 NC_006151.1 + 68267 0.74 0.59238
Target:  5'- -cGGCGAcGGUCGCGgcgCCGGGc-GCCa -3'
miRNA:   3'- uaCUGCUuCCAGUGCa--GGUCCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 17037 0.74 0.634183
Target:  5'- -cGGCGAcGaUCACGUCCAGGgcGUCg -3'
miRNA:   3'- uaCUGCUuCcAGUGCAGGUCCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 23353 0.73 0.686327
Target:  5'- -cGGCGgcGGUCACGUucucCCAGGc-GCCc -3'
miRNA:   3'- uaCUGCuuCCAGUGCA----GGUCCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 103869 0.72 0.737288
Target:  5'- -cGACGAGGGgacgCugGUCgAGGcgcGCCa -3'
miRNA:   3'- uaCUGCUUCCa---GugCAGgUCCaa-CGG- -5'
29445 3' -53.4 NC_006151.1 + 95672 0.72 0.747233
Target:  5'- uUGACGgcGcGcUCGcCGUCCAGGU-GCCg -3'
miRNA:   3'- uACUGCuuC-C-AGU-GCAGGUCCAaCGG- -5'
29445 3' -53.4 NC_006151.1 + 60553 0.71 0.757071
Target:  5'- -cGGCGAGGcG-CGCGcCCAGGagGCCg -3'
miRNA:   3'- uaCUGCUUC-CaGUGCaGGUCCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 132804 0.71 0.766795
Target:  5'- -aGGCGcuGGUacagCGCGUCCGGGcugGCCg -3'
miRNA:   3'- uaCUGCuuCCA----GUGCAGGUCCaa-CGG- -5'
29445 3' -53.4 NC_006151.1 + 41685 0.71 0.780195
Target:  5'- cGUGGgGAccGGcGUCACGUCCGGGggaagcggaagggGCCg -3'
miRNA:   3'- -UACUgCU--UC-CAGUGCAGGUCCaa-----------CGG- -5'
29445 3' -53.4 NC_006151.1 + 75341 0.71 0.785856
Target:  5'- cGUGcuCGAAGGUCACGUggCAGGgcacGCCg -3'
miRNA:   3'- -UACu-GCUUCCAGUGCAg-GUCCaa--CGG- -5'
29445 3' -53.4 NC_006151.1 + 65645 0.71 0.795174
Target:  5'- cGUGAgguCGAGGGUCGCGUacugCAGGUcGUCc -3'
miRNA:   3'- -UACU---GCUUCCAGUGCAg---GUCCAaCGG- -5'
29445 3' -53.4 NC_006151.1 + 135424 0.7 0.804338
Target:  5'- cGUGGCGcgccAGG-CAC-UCCAGGUUGCg -3'
miRNA:   3'- -UACUGCu---UCCaGUGcAGGUCCAACGg -5'
29445 3' -53.4 NC_006151.1 + 57583 0.7 0.839275
Target:  5'- uUGACGuAGGcgCACGUgaCCAGGccgGCCu -3'
miRNA:   3'- uACUGCuUCCa-GUGCA--GGUCCaa-CGG- -5'
29445 3' -53.4 NC_006151.1 + 53006 0.7 0.839275
Target:  5'- -cGACGAguacAGG-CGCGUCCAgcccugcaGGUUcGCCg -3'
miRNA:   3'- uaCUGCU----UCCaGUGCAGGU--------CCAA-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.