miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29445 3' -53.4 NC_006151.1 + 4396 0.67 0.934315
Target:  5'- --cGCGggGGUcCGCGgcgcggcCCGGGUagGCCa -3'
miRNA:   3'- uacUGCuuCCA-GUGCa------GGUCCAa-CGG- -5'
29445 3' -53.4 NC_006151.1 + 58871 0.67 0.934315
Target:  5'- -cGGCGcgccGGGUC-CGUCCAGGccgUGUa -3'
miRNA:   3'- uaCUGCu---UCCAGuGCAGGUCCa--ACGg -5'
29445 3' -53.4 NC_006151.1 + 95536 0.67 0.934315
Target:  5'- gAUGAgGAAGGcCAUGUCCuGGauggGCa -3'
miRNA:   3'- -UACUgCUUCCaGUGCAGGuCCaa--CGg -5'
29445 3' -53.4 NC_006151.1 + 117139 0.67 0.9291
Target:  5'- --cGCGGAGGUgCGCGaCCAGGc-GCCc -3'
miRNA:   3'- uacUGCUUCCA-GUGCaGGUCCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 20160 0.67 0.9291
Target:  5'- -cGugGAccgccGGGcCGCGcCCGGGUcgcgGCCg -3'
miRNA:   3'- uaCugCU-----UCCaGUGCaGGUCCAa---CGG- -5'
29445 3' -53.4 NC_006151.1 + 139649 0.67 0.923635
Target:  5'- --cGCGggGGUCGCGg-CGGGcgcGCCg -3'
miRNA:   3'- uacUGCuuCCAGUGCagGUCCaa-CGG- -5'
29445 3' -53.4 NC_006151.1 + 95353 0.68 0.917919
Target:  5'- --cGCGGgcAGGuUCACGcuggCCAGGUUGCa -3'
miRNA:   3'- uacUGCU--UCC-AGUGCa---GGUCCAACGg -5'
29445 3' -53.4 NC_006151.1 + 41748 0.68 0.911955
Target:  5'- cGUGGgGAccGGcGUCACGUCCGGcggaaGUUGCg -3'
miRNA:   3'- -UACUgCU--UC-CAGUGCAGGUC-----CAACGg -5'
29445 3' -53.4 NC_006151.1 + 110915 0.68 0.911955
Target:  5'- cGUGcCGcAGGuUCACGagggCCAGGgaggUGCCg -3'
miRNA:   3'- -UACuGCuUCC-AGUGCa---GGUCCa---ACGG- -5'
29445 3' -53.4 NC_006151.1 + 28787 0.68 0.901897
Target:  5'- -cGGCGGGgcGGUCcggcccgcgggacggGCGUCCGGGaccgGCCa -3'
miRNA:   3'- uaCUGCUU--CCAG---------------UGCAGGUCCaa--CGG- -5'
29445 3' -53.4 NC_006151.1 + 96441 0.68 0.899285
Target:  5'- -cGGCGAGGcgagCcagGCGUCCAGGUccGCCu -3'
miRNA:   3'- uaCUGCUUCca--G---UGCAGGUCCAa-CGG- -5'
29445 3' -53.4 NC_006151.1 + 70100 0.68 0.892585
Target:  5'- -cGGCGAAGGgCGCGagCGGGUccacGCCc -3'
miRNA:   3'- uaCUGCUUCCaGUGCagGUCCAa---CGG- -5'
29445 3' -53.4 NC_006151.1 + 89440 0.68 0.892585
Target:  5'- cAUGGCGAcGGUCACGUacgccugcaCCAGcaggGCCc -3'
miRNA:   3'- -UACUGCUuCCAGUGCA---------GGUCcaa-CGG- -5'
29445 3' -53.4 NC_006151.1 + 133798 0.68 0.889838
Target:  5'- -aGGCGugcagcauccGGGUgCACGUCCGGGUggcguaacccaggGCCa -3'
miRNA:   3'- uaCUGCu---------UCCA-GUGCAGGUCCAa------------CGG- -5'
29445 3' -53.4 NC_006151.1 + 116453 0.69 0.885646
Target:  5'- -cGGCGAcGGcguaCAUGUCCAGGgagacgagGCCg -3'
miRNA:   3'- uaCUGCUuCCa---GUGCAGGUCCaa------CGG- -5'
29445 3' -53.4 NC_006151.1 + 67498 0.69 0.885646
Target:  5'- --cACGAGcgcgcGGcUCGCGUCCGGGUccaggGCCa -3'
miRNA:   3'- uacUGCUU-----CC-AGUGCAGGUCCAa----CGG- -5'
29445 3' -53.4 NC_006151.1 + 117081 0.69 0.885646
Target:  5'- -aGGCGcguGGUCGCGUCCAcGccgGCCu -3'
miRNA:   3'- uaCUGCuu-CCAGUGCAGGUcCaa-CGG- -5'
29445 3' -53.4 NC_006151.1 + 91692 0.69 0.878472
Target:  5'- -cGugGGugGGGUgGCgGUCCAGGUccucgagGCCg -3'
miRNA:   3'- uaCugCU--UCCAgUG-CAGGUCCAa------CGG- -5'
29445 3' -53.4 NC_006151.1 + 122445 0.69 0.878472
Target:  5'- -aGGCGGAGGcgGCGUCCAcggcggcggcGGgcGCCg -3'
miRNA:   3'- uaCUGCUUCCagUGCAGGU----------CCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 22913 0.69 0.871069
Target:  5'- -aGACGAAGGUCGgcUCCGgcggcagucGGUgaUGCCg -3'
miRNA:   3'- uaCUGCUUCCAGUgcAGGU---------CCA--ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.