miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29445 3' -53.4 NC_006151.1 + 4012 0.67 0.938795
Target:  5'- -gGGCGAagaGGGcCGCGgcguaggUCCAGGcgGCCu -3'
miRNA:   3'- uaCUGCU---UCCaGUGC-------AGGUCCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 4102 0.66 0.956685
Target:  5'- -cGACGAGGG-CGacagaGUCCGcGGccUGCCg -3'
miRNA:   3'- uaCUGCUUCCaGUg----CAGGU-CCa-ACGG- -5'
29445 3' -53.4 NC_006151.1 + 4396 0.67 0.934315
Target:  5'- --cGCGggGGUcCGCGgcgcggcCCGGGUagGCCa -3'
miRNA:   3'- uacUGCuuCCA-GUGCa------GGUCCAa-CGG- -5'
29445 3' -53.4 NC_006151.1 + 16535 0.66 0.960438
Target:  5'- -gGACGGAGG-CGUGUCauCGGGU-GCCa -3'
miRNA:   3'- uaCUGCUUCCaGUGCAG--GUCCAaCGG- -5'
29445 3' -53.4 NC_006151.1 + 16776 0.66 0.960438
Target:  5'- -gGACGGAGG-CGUGUCauCGGGU-GCCa -3'
miRNA:   3'- uaCUGCUUCCaGUGCAG--GUCCAaCGG- -5'
29445 3' -53.4 NC_006151.1 + 17037 0.74 0.634183
Target:  5'- -cGGCGAcGaUCACGUCCAGGgcGUCg -3'
miRNA:   3'- uaCUGCUuCcAGUGCAGGUCCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 20160 0.67 0.9291
Target:  5'- -cGugGAccgccGGGcCGCGcCCGGGUcgcgGCCg -3'
miRNA:   3'- uaCugCU-----UCCaGUGCaGGUCCAa---CGG- -5'
29445 3' -53.4 NC_006151.1 + 21433 0.66 0.96396
Target:  5'- ---uCGggGGUCGCGgcgUgGGGUgGCCc -3'
miRNA:   3'- uacuGCuuCCAGUGCa--GgUCCAaCGG- -5'
29445 3' -53.4 NC_006151.1 + 22550 0.67 0.943998
Target:  5'- -aGGCGGAGGcCACGUggcGGUaGCCg -3'
miRNA:   3'- uaCUGCUUCCaGUGCAgguCCAaCGG- -5'
29445 3' -53.4 NC_006151.1 + 22913 0.69 0.871069
Target:  5'- -aGACGAAGGUCGgcUCCGgcggcagucGGUgaUGCCg -3'
miRNA:   3'- uaCUGCUUCCAGUgcAGGU---------CCA--ACGG- -5'
29445 3' -53.4 NC_006151.1 + 23353 0.73 0.686327
Target:  5'- -cGGCGgcGGUCACGUucucCCAGGc-GCCc -3'
miRNA:   3'- uaCUGCuuCCAGUGCA----GGUCCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 23689 0.69 0.855595
Target:  5'- -cGACGGAGGgcaugGCGUCCccGGGgcaGCCg -3'
miRNA:   3'- uaCUGCUUCCag---UGCAGG--UCCaa-CGG- -5'
29445 3' -53.4 NC_006151.1 + 23773 0.66 0.952697
Target:  5'- -aGGCGAcGGUCACGUUgaCGGGgu-CCg -3'
miRNA:   3'- uaCUGCUuCCAGUGCAG--GUCCaacGG- -5'
29445 3' -53.4 NC_006151.1 + 23905 0.66 0.956685
Target:  5'- -gGGCGucGGUCGCGggcccgaCGGGccGCCg -3'
miRNA:   3'- uaCUGCuuCCAGUGCag-----GUCCaaCGG- -5'
29445 3' -53.4 NC_006151.1 + 28787 0.68 0.901897
Target:  5'- -cGGCGGGgcGGUCcggcccgcgggacggGCGUCCGGGaccgGCCa -3'
miRNA:   3'- uaCUGCUU--CCAG---------------UGCAGGUCCaa--CGG- -5'
29445 3' -53.4 NC_006151.1 + 29218 0.7 0.847537
Target:  5'- gGUGGgGAuGGGUCAcCG-CCGGGUcgGCCg -3'
miRNA:   3'- -UACUgCU-UCCAGU-GCaGGUCCAa-CGG- -5'
29445 3' -53.4 NC_006151.1 + 37575 0.66 0.967257
Target:  5'- -cGGCG-AGGcCAUGUCCuGGcUGCa -3'
miRNA:   3'- uaCUGCuUCCaGUGCAGGuCCaACGg -5'
29445 3' -53.4 NC_006151.1 + 41685 0.71 0.780195
Target:  5'- cGUGGgGAccGGcGUCACGUCCGGGggaagcggaagggGCCg -3'
miRNA:   3'- -UACUgCU--UC-CAGUGCAGGUCCaa-----------CGG- -5'
29445 3' -53.4 NC_006151.1 + 41748 0.68 0.911955
Target:  5'- cGUGGgGAccGGcGUCACGUCCGGcggaaGUUGCg -3'
miRNA:   3'- -UACUgCU--UC-CAGUGCAGGUC-----CAACGg -5'
29445 3' -53.4 NC_006151.1 + 41873 0.67 0.943998
Target:  5'- -gGAgGAgcccGGcGUCACGUCCGGGgaagcgGUCa -3'
miRNA:   3'- uaCUgCU----UC-CAGUGCAGGUCCaa----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.