miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29445 5' -59.3 NC_006151.1 + 122464 0.66 0.772281
Target:  5'- gGCGGCGgCggGCGccgaGGCCgGGgACGCGg -3'
miRNA:   3'- -UGCCGUgGa-CGCa---CCGGaCCaUGUGC- -5'
29445 5' -59.3 NC_006151.1 + 113226 0.66 0.772281
Target:  5'- cCGGCACCgcgcCGUGGacgaguaCUGGgcggaGCACGa -3'
miRNA:   3'- uGCCGUGGac--GCACCg------GACCa----UGUGC- -5'
29445 5' -59.3 NC_006151.1 + 64223 0.66 0.772281
Target:  5'- -gGGCGCCUcgGCGUacagGGCCgcgacGGcgGCGCGg -3'
miRNA:   3'- ugCCGUGGA--CGCA----CCGGa----CCa-UGUGC- -5'
29445 5' -59.3 NC_006151.1 + 57290 0.66 0.772281
Target:  5'- -gGGCGuCCaGCGcGGCCUuGGcgGCGCGg -3'
miRNA:   3'- ugCCGU-GGaCGCaCCGGA-CCa-UGUGC- -5'
29445 5' -59.3 NC_006151.1 + 9919 0.66 0.771358
Target:  5'- cCGGCGCCU-CG-GGCCucggagaUGGggACGCGg -3'
miRNA:   3'- uGCCGUGGAcGCaCCGG-------ACCa-UGUGC- -5'
29445 5' -59.3 NC_006151.1 + 84625 0.66 0.771358
Target:  5'- cGCGGcCGCCgcgGCGcuggacaacgccaUGGCCgcgGGcGCGCGc -3'
miRNA:   3'- -UGCC-GUGGa--CGC-------------ACCGGa--CCaUGUGC- -5'
29445 5' -59.3 NC_006151.1 + 54352 0.66 0.762993
Target:  5'- cGCGGCGCgCUacgagGaCGUGGCCcGGgACugGa -3'
miRNA:   3'- -UGCCGUG-GA-----C-GCACCGGaCCaUGugC- -5'
29445 5' -59.3 NC_006151.1 + 71089 0.66 0.762993
Target:  5'- cACGGCGCCgcggGCGcgGGCgccGUGCGCu -3'
miRNA:   3'- -UGCCGUGGa---CGCa-CCGgacCAUGUGc -5'
29445 5' -59.3 NC_006151.1 + 15063 0.66 0.762993
Target:  5'- cCGGCGCCuucUGCGcGGCCcccUGGcgccccgACACGc -3'
miRNA:   3'- uGCCGUGG---ACGCaCCGG---ACCa------UGUGC- -5'
29445 5' -59.3 NC_006151.1 + 66075 0.66 0.753592
Target:  5'- gACGGcCGCCUgggcuuccacGCG-GGCCUGcaGCGCGc -3'
miRNA:   3'- -UGCC-GUGGA----------CGCaCCGGACcaUGUGC- -5'
29445 5' -59.3 NC_006151.1 + 98471 0.66 0.744088
Target:  5'- gUGGCGCCUGCGccacgaCUGGgacgaggGCACGg -3'
miRNA:   3'- uGCCGUGGACGCaccg--GACCa------UGUGC- -5'
29445 5' -59.3 NC_006151.1 + 92145 0.66 0.744088
Target:  5'- cGCGGCGCCaagGCcaucaUGGCCgcggccGUGCGCGc -3'
miRNA:   3'- -UGCCGUGGa--CGc----ACCGGac----CAUGUGC- -5'
29445 5' -59.3 NC_006151.1 + 54910 0.66 0.744088
Target:  5'- cCGGCGCagcGCGUgcacGGCgaGGUGCugGc -3'
miRNA:   3'- uGCCGUGga-CGCA----CCGgaCCAUGugC- -5'
29445 5' -59.3 NC_006151.1 + 97980 0.66 0.743132
Target:  5'- cGCGGUgguucuuGCCgggcgGCGUGGCC-GcGUAgGCGg -3'
miRNA:   3'- -UGCCG-------UGGa----CGCACCGGaC-CAUgUGC- -5'
29445 5' -59.3 NC_006151.1 + 91114 0.66 0.740259
Target:  5'- cGCGGCGCCcuucgccacggcgGCGagcuUGGCCaccUGGggGCGCGa -3'
miRNA:   3'- -UGCCGUGGa------------CGC----ACCGG---ACCa-UGUGC- -5'
29445 5' -59.3 NC_006151.1 + 66302 0.66 0.738339
Target:  5'- cGCGGCGCUcccggcgguccgagGCGagcauguucGGCCUGGgcgACGCGa -3'
miRNA:   3'- -UGCCGUGGa-------------CGCa--------CCGGACCa--UGUGC- -5'
29445 5' -59.3 NC_006151.1 + 133631 0.66 0.734488
Target:  5'- cGCGGCgGCCgggGCgGUGGUCcgGGUGCGa- -3'
miRNA:   3'- -UGCCG-UGGa--CG-CACCGGa-CCAUGUgc -5'
29445 5' -59.3 NC_006151.1 + 138314 0.66 0.733523
Target:  5'- cGCGcGCuucagcuGCCUGCG-GGCCcGGcACGCGc -3'
miRNA:   3'- -UGC-CG-------UGGACGCaCCGGaCCaUGUGC- -5'
29445 5' -59.3 NC_006151.1 + 101296 0.66 0.724802
Target:  5'- gGCGGCGCCgcgcugcacUGCGUcuucucGCg-GGUGCACGg -3'
miRNA:   3'- -UGCCGUGG---------ACGCAc-----CGgaCCAUGUGC- -5'
29445 5' -59.3 NC_006151.1 + 5364 0.66 0.724802
Target:  5'- cGCGGCGCCgGCGgGGCUgucucugcgGGgGCGCc -3'
miRNA:   3'- -UGCCGUGGaCGCaCCGGa--------CCaUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.