miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 91618 0.67 0.467534
Target:  5'- gCCGGUgcgcugcAGGgGCUCGcCGuccuccagcacgaagGGCCCGUCg -3'
miRNA:   3'- aGGCCG-------UCCgCGAGCcGC---------------UCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 69084 0.67 0.464878
Target:  5'- -gCGGCAcGGCcaGCUCGGCGuGCCg--- -3'
miRNA:   3'- agGCCGU-CCG--CGAGCCGCuCGGgcag -5'
29446 5' -64.7 NC_006151.1 + 91233 0.67 0.464878
Target:  5'- ---cGCAGGCgacGCUCGGgGAGCcgggccCCGUCg -3'
miRNA:   3'- aggcCGUCCG---CGAGCCgCUCG------GGCAG- -5'
29446 5' -64.7 NC_006151.1 + 84426 0.67 0.464878
Target:  5'- --aGGCGGcGCGCggCGGCGcgcGGCCCauGUCc -3'
miRNA:   3'- aggCCGUC-CGCGa-GCCGC---UCGGG--CAG- -5'
29446 5' -64.7 NC_006151.1 + 33233 0.67 0.464878
Target:  5'- cCCGGCGGGCGggaGG-GGGUCCGg- -3'
miRNA:   3'- aGGCCGUCCGCgagCCgCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 21604 0.67 0.464878
Target:  5'- -aCGGCGuGGCGg-CGGCGuaGGCCCG-Cg -3'
miRNA:   3'- agGCCGU-CCGCgaGCCGC--UCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 90693 0.67 0.464878
Target:  5'- -gCGGCGGGgGCggCGGaCGcGCCCGcCc -3'
miRNA:   3'- agGCCGUCCgCGa-GCC-GCuCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 81434 0.67 0.456084
Target:  5'- gUCgCGGCGcagcgagacGGCGCaCGGCGAGaggaCGUCg -3'
miRNA:   3'- -AG-GCCGU---------CCGCGaGCCGCUCgg--GCAG- -5'
29446 5' -64.7 NC_006151.1 + 110959 0.67 0.456084
Target:  5'- gUCCGGCGGGCGUccuccacgaUCGcGUGcGCCuCGg- -3'
miRNA:   3'- -AGGCCGUCCGCG---------AGC-CGCuCGG-GCag -5'
29446 5' -64.7 NC_006151.1 + 94662 0.67 0.456084
Target:  5'- gCCaGCGGGUGCcCGGCGGGCagcuccCCGa- -3'
miRNA:   3'- aGGcCGUCCGCGaGCCGCUCG------GGCag -5'
29446 5' -64.7 NC_006151.1 + 118221 0.67 0.44738
Target:  5'- -gUGGCGGGCGCcCGGaccacCGGGCUCGg- -3'
miRNA:   3'- agGCCGUCCGCGaGCC-----GCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 128527 0.67 0.44738
Target:  5'- cCCGaGCccgAGGC-CaCGGCGGGCCCGcCg -3'
miRNA:   3'- aGGC-CG---UCCGcGaGCCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 90779 0.67 0.452591
Target:  5'- gUCGGCGGGCGCgcagaagaagaaGGUGGucGCCCG-Ca -3'
miRNA:   3'- aGGCCGUCCGCGag----------CCGCU--CGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 115063 0.67 0.455209
Target:  5'- gUCCGGgGGGCggcugaGCUCGGCcGucaugacgaagucGGCCaCGUCc -3'
miRNA:   3'- -AGGCCgUCCG------CGAGCCG-C-------------UCGG-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 66865 0.67 0.456084
Target:  5'- gCCGGgGcGGCGCgaagGGCGcGCCCGg- -3'
miRNA:   3'- aGGCCgU-CCGCGag--CCGCuCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 69798 0.67 0.456084
Target:  5'- aCUGGCggcacAGGCGCUCcaGGCGcuCgCCGUCc -3'
miRNA:   3'- aGGCCG-----UCCGCGAG--CCGCucG-GGCAG- -5'
29446 5' -64.7 NC_006151.1 + 88862 0.67 0.456084
Target:  5'- cUCCcGCGGGaGCUCcgGGCGcgggGGCUCGUCa -3'
miRNA:   3'- -AGGcCGUCCgCGAG--CCGC----UCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 52396 0.68 0.413517
Target:  5'- -gCGGCGGGCGC-CGcCGcGCCCGa- -3'
miRNA:   3'- agGCCGUCCGCGaGCcGCuCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 124129 0.68 0.4053
Target:  5'- gUCCGGCuccacGGUGgUgCGGCugGAGCCCGa- -3'
miRNA:   3'- -AGGCCGu----CCGCgA-GCCG--CUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 71287 0.68 0.4053
Target:  5'- -aCGGCcucGGGgGC-CGGCGAGCaccgCGUCu -3'
miRNA:   3'- agGCCG---UCCgCGaGCCGCUCGg---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.