Results 81 - 100 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29446 | 5' | -64.7 | NC_006151.1 | + | 5529 | 0.68 | 0.389181 |
Target: 5'- -gCGGCcgAGGaucgagccgccuCGCggCGGCGGGCUCGUCg -3' miRNA: 3'- agGCCG--UCC------------GCGa-GCCGCUCGGGCAG- -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 53278 | 0.68 | 0.38128 |
Target: 5'- gCCGcGCgugcucgaAGcGCGaCUCGaGCGAGUCCGUCu -3' miRNA: 3'- aGGC-CG--------UC-CGC-GAGC-CGCUCGGGCAG- -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 2533 | 0.68 | 0.38128 |
Target: 5'- cCCGagcGCGGaGCGCU-GGCGGGCCaUGUCc -3' miRNA: 3'- aGGC---CGUC-CGCGAgCCGCUCGG-GCAG- -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 43008 | 0.68 | 0.373487 |
Target: 5'- -gCGGCGGGCGCUUGGCa--CCCcUCc -3' miRNA: 3'- agGCCGUCCGCGAGCCGcucGGGcAG- -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 647 | 0.68 | 0.373487 |
Target: 5'- gCCGGCuuccgGGGCGCggccggGGCGGGCuCCG-Cg -3' miRNA: 3'- aGGCCG-----UCCGCGag----CCGCUCG-GGCaG- -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 72910 | 0.68 | 0.365803 |
Target: 5'- cCCGGCucuuGGCGaccgcCUCGGCGGGCgUGa- -3' miRNA: 3'- aGGCCGu---CCGC-----GAGCCGCUCGgGCag -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 65038 | 0.68 | 0.365803 |
Target: 5'- -aCGGCAGGgGgCcCGGCGGcggcgggcGCCCGUUa -3' miRNA: 3'- agGCCGUCCgC-GaGCCGCU--------CGGGCAG- -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 27086 | 0.68 | 0.365803 |
Target: 5'- --gGGCGcGGCGCagGGCGcgcgugucGCCCGUCa -3' miRNA: 3'- aggCCGU-CCGCGagCCGCu-------CGGGCAG- -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 33999 | 0.68 | 0.397188 |
Target: 5'- cCCGGagGGGCGUccCGGCGcgccGGCCCGg- -3' miRNA: 3'- aGGCCg-UCCGCGa-GCCGC----UCGGGCag -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 100806 | 0.68 | 0.397188 |
Target: 5'- -gUGGCGGGCGaCggcgaGGCGGGCCCc-- -3' miRNA: 3'- agGCCGUCCGC-Gag---CCGCUCGGGcag -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 52396 | 0.68 | 0.413517 |
Target: 5'- -gCGGCGGGCGC-CGcCGcGCCCGa- -3' miRNA: 3'- agGCCGUCCGCGaGCcGCuCGGGCag -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 124129 | 0.68 | 0.4053 |
Target: 5'- gUCCGGCuccacGGUGgUgCGGCugGAGCCCGa- -3' miRNA: 3'- -AGGCCGu----CCGCgA-GCCG--CUCGGGCag -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 71287 | 0.68 | 0.4053 |
Target: 5'- -aCGGCcucGGGgGC-CGGCGAGCaccgCGUCu -3' miRNA: 3'- agGCCG---UCCgCGaGCCGCUCGg---GCAG- -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 23035 | 0.68 | 0.4053 |
Target: 5'- -gCGGCgaagaagcGGGCgGCcgCGGCGAGCCCa-- -3' miRNA: 3'- agGCCG--------UCCG-CGa-GCCGCUCGGGcag -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 103553 | 0.68 | 0.4053 |
Target: 5'- gCCgGGCAGcCGCUCGGgGcGCUgGUCa -3' miRNA: 3'- aGG-CCGUCcGCGAGCCgCuCGGgCAG- -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 26338 | 0.68 | 0.4053 |
Target: 5'- --aGGCccgccucacgGGGCGg-CGGCGGGCCgCGUCg -3' miRNA: 3'- aggCCG----------UCCGCgaGCCGCUCGG-GCAG- -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 59296 | 0.68 | 0.404485 |
Target: 5'- -gCGGCGuGGCGCccgcggcUCaGCGGGCCCG-Cg -3' miRNA: 3'- agGCCGU-CCGCG-------AGcCGCUCGGGCaG- -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 138154 | 0.68 | 0.404485 |
Target: 5'- aCCGGCGcGCGCUCgaggccuucguGGCGGacguggccauggcGCCCGUg -3' miRNA: 3'- aGGCCGUcCGCGAG-----------CCGCU-------------CGGGCAg -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 89465 | 0.68 | 0.402856 |
Target: 5'- aCCaGCAGggcccgcgucacguGCGCggCGGCGAGCCgGUa -3' miRNA: 3'- aGGcCGUC--------------CGCGa-GCCGCUCGGgCAg -5' |
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29446 | 5' | -64.7 | NC_006151.1 | + | 136994 | 0.68 | 0.40042 |
Target: 5'- -gCGGCGGGCGCgcgcgcaCGGCGcugggcgcccugcucGGCCUGcCg -3' miRNA: 3'- agGCCGUCCGCGa------GCCGC---------------UCGGGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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