miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 97239 0.71 0.246525
Target:  5'- uUCCGGguGGCGCggccgcgcaugUCGG-GGGCCCa-- -3'
miRNA:   3'- -AGGCCguCCGCG-----------AGCCgCUCGGGcag -5'
29446 5' -64.7 NC_006151.1 + 94523 0.71 0.252213
Target:  5'- -gCGGgAGGCGUguaacuucccgUCGGCGGGCUCGgUCa -3'
miRNA:   3'- agGCCgUCCGCG-----------AGCCGCUCGGGC-AG- -5'
29446 5' -64.7 NC_006151.1 + 51228 0.71 0.252213
Target:  5'- cCCGcGCAGGCggcgcgagcGCUCGGCGcAGCUCcagGUCg -3'
miRNA:   3'- aGGC-CGUCCG---------CGAGCCGC-UCGGG---CAG- -5'
29446 5' -64.7 NC_006151.1 + 102602 0.71 0.258008
Target:  5'- gUCgCaGCGGGCGCUCGaGCGGGCgCG-Cg -3'
miRNA:   3'- -AG-GcCGUCCGCGAGC-CGCUCGgGCaG- -5'
29446 5' -64.7 NC_006151.1 + 64848 0.71 0.258008
Target:  5'- cCCGGCgaGGGC-CUCGGCGGagggccgcuGCCCGg- -3'
miRNA:   3'- aGGCCG--UCCGcGAGCCGCU---------CGGGCag -5'
29446 5' -64.7 NC_006151.1 + 141410 0.71 0.263912
Target:  5'- gUCCGGCGaucGGUGCg-GGCGcGGCCCGg- -3'
miRNA:   3'- -AGGCCGU---CCGCGagCCGC-UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 129398 0.71 0.269925
Target:  5'- cUCUGGguGGCGCgcggcguauUCGGCGAGgUCGa- -3'
miRNA:   3'- -AGGCCguCCGCG---------AGCCGCUCgGGCag -5'
29446 5' -64.7 NC_006151.1 + 125476 0.7 0.282281
Target:  5'- -aCGGCc-GCGCUCGGCcAGCgCGUCu -3'
miRNA:   3'- agGCCGucCGCGAGCCGcUCGgGCAG- -5'
29446 5' -64.7 NC_006151.1 + 90633 0.7 0.288625
Target:  5'- gCCcGCGGGCGCUUGGCGAuggGCgUGUa -3'
miRNA:   3'- aGGcCGUCCGCGAGCCGCU---CGgGCAg -5'
29446 5' -64.7 NC_006151.1 + 78041 0.7 0.291194
Target:  5'- cCCGGCGacgcGGCGCaucugggcgacgcgCGGCggGAGCCUGUCc -3'
miRNA:   3'- aGGCCGU----CCGCGa-------------GCCG--CUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 67728 0.7 0.29378
Target:  5'- -aCGGCGcGGCGCacaggcacggcgCGGCGGcCCCGUCg -3'
miRNA:   3'- agGCCGU-CCGCGa-----------GCCGCUcGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 46557 0.7 0.29508
Target:  5'- gCCGGCgcccAGGCGCUCcccGCGcagGGCCCGa- -3'
miRNA:   3'- aGGCCG----UCCGCGAGc--CGC---UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 53983 0.7 0.29508
Target:  5'- cUCC-GCGGGCGUcgCGGCGAGCucCCGg- -3'
miRNA:   3'- -AGGcCGUCCGCGa-GCCGCUCG--GGCag -5'
29446 5' -64.7 NC_006151.1 + 82421 0.7 0.29508
Target:  5'- cCCGagaggcGCGGGCGCUCGcGCGGGCgCUG-Ca -3'
miRNA:   3'- aGGC------CGUCCGCGAGC-CGCUCG-GGCaG- -5'
29446 5' -64.7 NC_006151.1 + 81090 0.7 0.300986
Target:  5'- gCCGGCAGGUGCUgGGacuCGGGCaugcgauCCGUg -3'
miRNA:   3'- aGGCCGUCCGCGAgCC---GCUCG-------GGCAg -5'
29446 5' -64.7 NC_006151.1 + 68050 0.7 0.301648
Target:  5'- -gCGGCGGGCacggGCUCGGCGAcggGCagGUCg -3'
miRNA:   3'- agGCCGUCCG----CGAGCCGCU---CGggCAG- -5'
29446 5' -64.7 NC_006151.1 + 3936 0.7 0.301648
Target:  5'- --gGGCAGGCcgggcgcggGCUCcGCGGGCCCGg- -3'
miRNA:   3'- aggCCGUCCG---------CGAGcCGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 112046 0.7 0.307655
Target:  5'- gCCGGCGGGCGggCGGCGgcgguggugguggGGCUgGUg -3'
miRNA:   3'- aGGCCGUCCGCgaGCCGC-------------UCGGgCAg -5'
29446 5' -64.7 NC_006151.1 + 122974 0.7 0.308328
Target:  5'- gCCGGCgacGGGgGCgUCGGCGAcgaagacggGCCCGg- -3'
miRNA:   3'- aGGCCG---UCCgCG-AGCCGCU---------CGGGCag -5'
29446 5' -64.7 NC_006151.1 + 129962 0.7 0.308328
Target:  5'- gCCGGCAcGCGCgagcgcaCGGCGcggaaGGCCuCGUCg -3'
miRNA:   3'- aGGCCGUcCGCGa------GCCGC-----UCGG-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.