miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 129962 0.7 0.308328
Target:  5'- gCCGGCAcGCGCgagcgcaCGGCGcggaaGGCCuCGUCg -3'
miRNA:   3'- aGGCCGUcCGCGa------GCCGC-----UCGG-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 4922 0.7 0.314435
Target:  5'- cCCGaGCGGGgugaGCagcggcccgucggUCGGCGggGGCCCGUCg -3'
miRNA:   3'- aGGC-CGUCCg---CG-------------AGCCGC--UCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 63696 0.7 0.31512
Target:  5'- cUgGGCGuGCGCguucgCGGCGAcguggcGCCCGUCg -3'
miRNA:   3'- aGgCCGUcCGCGa----GCCGCU------CGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 51586 0.7 0.31512
Target:  5'- cUCgGGCGGGUGgaCGGCGGGUCaGUa -3'
miRNA:   3'- -AGgCCGUCCGCgaGCCGCUCGGgCAg -5'
29446 5' -64.7 NC_006151.1 + 18308 0.69 0.322024
Target:  5'- gCCGGagcgGGGCGCcuccUCGGgGcgcacguacAGCCCGUCg -3'
miRNA:   3'- aGGCCg---UCCGCG----AGCCgC---------UCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 40437 0.69 0.329041
Target:  5'- cCCGGC-GGCGCUugccucccCGGCGccugccuccccGGCCCGg- -3'
miRNA:   3'- aGGCCGuCCGCGA--------GCCGC-----------UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 46850 0.69 0.329041
Target:  5'- cCCggGGCGGGC-CUcCGGCGucuAGCUCGUCg -3'
miRNA:   3'- aGG--CCGUCCGcGA-GCCGC---UCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 63463 0.69 0.329041
Target:  5'- gUCCGGUucugcucgcAGGgGCggCGGCGGcGCCCGa- -3'
miRNA:   3'- -AGGCCG---------UCCgCGa-GCCGCU-CGGGCag -5'
29446 5' -64.7 NC_006151.1 + 21497 0.69 0.333305
Target:  5'- gCCGGgGGGCGCgggcgucaccggGGCGGGCUCGg- -3'
miRNA:   3'- aGGCCgUCCGCGag----------CCGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 119773 0.69 0.33617
Target:  5'- gCCGGCGcGCGCaUCGGCGAGaCgGUg -3'
miRNA:   3'- aGGCCGUcCGCG-AGCCGCUCgGgCAg -5'
29446 5' -64.7 NC_006151.1 + 24627 0.69 0.33617
Target:  5'- cCCGuGCAGGUa---GGCGAGCCCG-Cg -3'
miRNA:   3'- aGGC-CGUCCGcgagCCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 63412 0.69 0.33617
Target:  5'- aCgGGCAcGGCGCa-GGCGGGCggcaCGUCg -3'
miRNA:   3'- aGgCCGU-CCGCGagCCGCUCGg---GCAG- -5'
29446 5' -64.7 NC_006151.1 + 92652 0.69 0.343411
Target:  5'- gCCGGCaAGGCGCUcgcccugcugcCGGCG-GCCgGg- -3'
miRNA:   3'- aGGCCG-UCCGCGA-----------GCCGCuCGGgCag -5'
29446 5' -64.7 NC_006151.1 + 82615 0.69 0.343411
Target:  5'- cCCGcgcGCGGGCGCcgCGGUGGGCgCGg- -3'
miRNA:   3'- aGGC---CGUCCGCGa-GCCGCUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 123106 0.69 0.343411
Target:  5'- cUCUcGC-GGCGCUCGGCGgcgAGCCUGg- -3'
miRNA:   3'- -AGGcCGuCCGCGAGCCGC---UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 18672 0.69 0.348547
Target:  5'- gUCCGGCcguacggguuccacGGGCGCgcgGGCGGcGCCggCGUCg -3'
miRNA:   3'- -AGGCCG--------------UCCGCGag-CCGCU-CGG--GCAG- -5'
29446 5' -64.7 NC_006151.1 + 2596 0.69 0.350024
Target:  5'- -gCGGUAGGCGCgCGGCGgcagcgggaccggGGUCCGg- -3'
miRNA:   3'- agGCCGUCCGCGaGCCGC-------------UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 135916 0.69 0.350764
Target:  5'- cCCGGCGGucgugcgcGCGCUcugccgCGGgGAGCCCcUCg -3'
miRNA:   3'- aGGCCGUC--------CGCGA------GCCgCUCGGGcAG- -5'
29446 5' -64.7 NC_006151.1 + 86435 0.69 0.350764
Target:  5'- cUCgCGGCGccuGGCGCcCGGCGAGgccCCCGa- -3'
miRNA:   3'- -AG-GCCGU---CCGCGaGCCGCUC---GGGCag -5'
29446 5' -64.7 NC_006151.1 + 98057 0.69 0.350764
Target:  5'- aCCaGCcccGGGCGCUCGGCcugGGGCUCG-Ca -3'
miRNA:   3'- aGGcCG---UCCGCGAGCCG---CUCGGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.