miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 135916 0.69 0.350764
Target:  5'- cCCGGCGGucgugcgcGCGCUcugccgCGGgGAGCCCcUCg -3'
miRNA:   3'- aGGCCGUC--------CGCGA------GCCgCUCGGGcAG- -5'
29446 5' -64.7 NC_006151.1 + 91108 0.68 0.364279
Target:  5'- cCCGGCcgcGGCGCccuucgccacggCGGCGAGCuuGg- -3'
miRNA:   3'- aGGCCGu--CCGCGa-----------GCCGCUCGggCag -5'
29446 5' -64.7 NC_006151.1 + 4391 0.68 0.365803
Target:  5'- cCCGGCgcGGGgGUccgCGGCGcGGCCCGg- -3'
miRNA:   3'- aGGCCG--UCCgCGa--GCCGC-UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 65038 0.68 0.365803
Target:  5'- -aCGGCAGGgGgCcCGGCGGcggcgggcGCCCGUUa -3'
miRNA:   3'- agGCCGUCCgC-GaGCCGCU--------CGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 72910 0.68 0.365803
Target:  5'- cCCGGCucuuGGCGaccgcCUCGGCGGGCgUGa- -3'
miRNA:   3'- aGGCCGu---CCGC-----GAGCCGCUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 27086 0.68 0.365803
Target:  5'- --gGGCGcGGCGCagGGCGcgcgugucGCCCGUCa -3'
miRNA:   3'- aggCCGU-CCGCGagCCGCu-------CGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 43008 0.68 0.373487
Target:  5'- -gCGGCGGGCGCUUGGCa--CCCcUCc -3'
miRNA:   3'- agGCCGUCCGCGAGCCGcucGGGcAG- -5'
29446 5' -64.7 NC_006151.1 + 647 0.68 0.373487
Target:  5'- gCCGGCuuccgGGGCGCggccggGGCGGGCuCCG-Cg -3'
miRNA:   3'- aGGCCG-----UCCGCGag----CCGCUCG-GGCaG- -5'
29446 5' -64.7 NC_006151.1 + 2533 0.68 0.38128
Target:  5'- cCCGagcGCGGaGCGCU-GGCGGGCCaUGUCc -3'
miRNA:   3'- aGGC---CGUC-CGCGAgCCGCUCGG-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 53278 0.68 0.38128
Target:  5'- gCCGcGCgugcucgaAGcGCGaCUCGaGCGAGUCCGUCu -3'
miRNA:   3'- aGGC-CG--------UC-CGC-GAGC-CGCUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 5529 0.68 0.389181
Target:  5'- -gCGGCcgAGGaucgagccgccuCGCggCGGCGGGCUCGUCg -3'
miRNA:   3'- agGCCG--UCC------------GCGa-GCCGCUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 63745 0.68 0.389181
Target:  5'- cUCCGGCgcgucggcgGGGCGUccUCGGCGcccCCgCGUCg -3'
miRNA:   3'- -AGGCCG---------UCCGCG--AGCCGCuc-GG-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 65504 0.68 0.397188
Target:  5'- gCCGGCGGaGCGCgccuccuccgCGGCcAGCagCGUCa -3'
miRNA:   3'- aGGCCGUC-CGCGa---------GCCGcUCGg-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 7661 0.68 0.397188
Target:  5'- cUCGGCGcGCGCUCcgagGGCGccccAGCCgGUCg -3'
miRNA:   3'- aGGCCGUcCGCGAG----CCGC----UCGGgCAG- -5'
29446 5' -64.7 NC_006151.1 + 33999 0.68 0.397188
Target:  5'- cCCGGagGGGCGUccCGGCGcgccGGCCCGg- -3'
miRNA:   3'- aGGCCg-UCCGCGa-GCCGC----UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 100806 0.68 0.397188
Target:  5'- -gUGGCGGGCGaCggcgaGGCGGGCCCc-- -3'
miRNA:   3'- agGCCGUCCGC-Gag---CCGCUCGGGcag -5'
29446 5' -64.7 NC_006151.1 + 136994 0.68 0.40042
Target:  5'- -gCGGCGGGCGCgcgcgcaCGGCGcugggcgcccugcucGGCCUGcCg -3'
miRNA:   3'- agGCCGUCCGCGa------GCCGC---------------UCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 89465 0.68 0.402856
Target:  5'- aCCaGCAGggcccgcgucacguGCGCggCGGCGAGCCgGUa -3'
miRNA:   3'- aGGcCGUC--------------CGCGa-GCCGCUCGGgCAg -5'
29446 5' -64.7 NC_006151.1 + 59296 0.68 0.404485
Target:  5'- -gCGGCGuGGCGCccgcggcUCaGCGGGCCCG-Cg -3'
miRNA:   3'- agGCCGU-CCGCG-------AGcCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 138154 0.68 0.404485
Target:  5'- aCCGGCGcGCGCUCgaggccuucguGGCGGacguggccauggcGCCCGUg -3'
miRNA:   3'- aGGCCGUcCGCGAG-----------CCGCU-------------CGGGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.