miRNA display CGI


Results 121 - 140 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 3063 0.67 0.437912
Target:  5'- gUCCGGCgugcagaggcgguGGGCGaaggCGGCGAGCagCGcCg -3'
miRNA:   3'- -AGGCCG-------------UCCGCga--GCCGCUCGg-GCaG- -5'
29446 5' -64.7 NC_006151.1 + 37330 0.67 0.437912
Target:  5'- aCCGaCGGGCcgcugcucaccccGCUCGGgGAGCCCu-- -3'
miRNA:   3'- aGGCcGUCCG-------------CGAGCCgCUCGGGcag -5'
29446 5' -64.7 NC_006151.1 + 119029 0.67 0.438768
Target:  5'- cUCCgaGGCGGGCGCcaaggaCGGCGGcGCCgCGg- -3'
miRNA:   3'- -AGG--CCGUCCGCGa-----GCCGCU-CGG-GCag -5'
29446 5' -64.7 NC_006151.1 + 3886 0.67 0.438768
Target:  5'- gCCGGCGccGGCGCUgGGacgaCGAGgCCGg- -3'
miRNA:   3'- aGGCCGU--CCGCGAgCC----GCUCgGGCag -5'
29446 5' -64.7 NC_006151.1 + 133670 0.67 0.438768
Target:  5'- gCCGGCGcggcGGCGCgcccccgaGGCGGuCUCGUCg -3'
miRNA:   3'- aGGCCGU----CCGCGag------CCGCUcGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 55222 0.67 0.44738
Target:  5'- uUCgGGCAccacGGCGC-CGGCGcgcAGCCgGUg -3'
miRNA:   3'- -AGgCCGU----CCGCGaGCCGC---UCGGgCAg -5'
29446 5' -64.7 NC_006151.1 + 118221 0.67 0.44738
Target:  5'- -gUGGCGGGCGCcCGGaccacCGGGCUCGg- -3'
miRNA:   3'- agGCCGUCCGCGaGCC-----GCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 128527 0.67 0.44738
Target:  5'- cCCGaGCccgAGGC-CaCGGCGGGCCCGcCg -3'
miRNA:   3'- aGGC-CG---UCCGcGaGCCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 33921 0.67 0.44738
Target:  5'- gUCCGGCGGGCGgaUCGa--GGCCCG-Cg -3'
miRNA:   3'- -AGGCCGUCCGCg-AGCcgcUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 90779 0.67 0.452591
Target:  5'- gUCGGCGGGCGCgcagaagaagaaGGUGGucGCCCG-Ca -3'
miRNA:   3'- aGGCCGUCCGCGag----------CCGCU--CGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 115063 0.67 0.455209
Target:  5'- gUCCGGgGGGCggcugaGCUCGGCcGucaugacgaagucGGCCaCGUCc -3'
miRNA:   3'- -AGGCCgUCCG------CGAGCCG-C-------------UCGG-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 69798 0.67 0.456084
Target:  5'- aCUGGCggcacAGGCGCUCcaGGCGcuCgCCGUCc -3'
miRNA:   3'- aGGCCG-----UCCGCGAG--CCGCucG-GGCAG- -5'
29446 5' -64.7 NC_006151.1 + 66865 0.67 0.456084
Target:  5'- gCCGGgGcGGCGCgaagGGCGcGCCCGg- -3'
miRNA:   3'- aGGCCgU-CCGCGag--CCGCuCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 81434 0.67 0.456084
Target:  5'- gUCgCGGCGcagcgagacGGCGCaCGGCGAGaggaCGUCg -3'
miRNA:   3'- -AG-GCCGU---------CCGCGaGCCGCUCgg--GCAG- -5'
29446 5' -64.7 NC_006151.1 + 110959 0.67 0.456084
Target:  5'- gUCCGGCGGGCGUccuccacgaUCGcGUGcGCCuCGg- -3'
miRNA:   3'- -AGGCCGUCCGCG---------AGC-CGCuCGG-GCag -5'
29446 5' -64.7 NC_006151.1 + 94662 0.67 0.456084
Target:  5'- gCCaGCGGGUGCcCGGCGGGCagcuccCCGa- -3'
miRNA:   3'- aGGcCGUCCGCGaGCCGCUCG------GGCag -5'
29446 5' -64.7 NC_006151.1 + 88862 0.67 0.456084
Target:  5'- cUCCcGCGGGaGCUCcgGGCGcgggGGCUCGUCa -3'
miRNA:   3'- -AGGcCGUCCgCGAG--CCGC----UCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 21604 0.67 0.464878
Target:  5'- -aCGGCGuGGCGg-CGGCGuaGGCCCG-Cg -3'
miRNA:   3'- agGCCGU-CCGCgaGCCGC--UCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 33233 0.67 0.464878
Target:  5'- cCCGGCGGGCGggaGG-GGGUCCGg- -3'
miRNA:   3'- aGGCCGUCCGCgagCCgCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 84426 0.67 0.464878
Target:  5'- --aGGCGGcGCGCggCGGCGcgcGGCCCauGUCc -3'
miRNA:   3'- aggCCGUC-CGCGa-GCCGC---UCGGG--CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.