miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 119029 0.67 0.438768
Target:  5'- cUCCgaGGCGGGCGCcaaggaCGGCGGcGCCgCGg- -3'
miRNA:   3'- -AGG--CCGUCCGCGa-----GCCGCU-CGG-GCag -5'
29446 5' -64.7 NC_006151.1 + 133670 0.67 0.438768
Target:  5'- gCCGGCGcggcGGCGCgcccccgaGGCGGuCUCGUCg -3'
miRNA:   3'- aGGCCGU----CCGCGag------CCGCUcGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 37330 0.67 0.437912
Target:  5'- aCCGaCGGGCcgcugcucaccccGCUCGGgGAGCCCu-- -3'
miRNA:   3'- aGGCcGUCCG-------------CGAGCCgCUCGGGcag -5'
29446 5' -64.7 NC_006151.1 + 3063 0.67 0.437912
Target:  5'- gUCCGGCgugcagaggcgguGGGCGaaggCGGCGAGCagCGcCg -3'
miRNA:   3'- -AGGCCG-------------UCCGCga--GCCGCUCGg-GCaG- -5'
29446 5' -64.7 NC_006151.1 + 24890 0.67 0.437057
Target:  5'- gCCGGCGGGCcacgaagacgCGGCccuccGAGCCCGa- -3'
miRNA:   3'- aGGCCGUCCGcga-------GCCG-----CUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 28762 0.67 0.430253
Target:  5'- gCUGGCAGcGUGCcaggacccgagUCGGCGGGgCgGUCc -3'
miRNA:   3'- aGGCCGUC-CGCG-----------AGCCGCUCgGgCAG- -5'
29446 5' -64.7 NC_006151.1 + 134990 0.67 0.430253
Target:  5'- cUCgGGCGGGCGCgucUUGGCGggGGCgCGg- -3'
miRNA:   3'- -AGgCCGUCCGCG---AGCCGC--UCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 75447 0.67 0.430253
Target:  5'- gCCGGCGuGGCGCgcguagcggUCGGCG-GCCgGc- -3'
miRNA:   3'- aGGCCGU-CCGCG---------AGCCGCuCGGgCag -5'
29446 5' -64.7 NC_006151.1 + 131115 0.67 0.430253
Target:  5'- cCCGGCcgcGGCGCgggaggccgCGGCGccgcGgCCGUCa -3'
miRNA:   3'- aGGCCGu--CCGCGa--------GCCGCu---CgGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 22812 0.67 0.429406
Target:  5'- cCCGGCcgucaggugcaggGGGCGCgaGGCGAGCgCGc- -3'
miRNA:   3'- aGGCCG-------------UCCGCGagCCGCUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 7015 0.67 0.421835
Target:  5'- gUCCGGCccccgcGGCGgccauCUCGGCucGCCCGg- -3'
miRNA:   3'- -AGGCCGu-----CCGC-----GAGCCGcuCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 81251 0.67 0.421835
Target:  5'- cCCGcGCAGGgGCagGGCGAGCagCGcCu -3'
miRNA:   3'- aGGC-CGUCCgCGagCCGCUCGg-GCaG- -5'
29446 5' -64.7 NC_006151.1 + 83358 0.67 0.421835
Target:  5'- cCCGGCgcgcgcgcGGGCGCgcaGGCGccgcagguGCUCGUCc -3'
miRNA:   3'- aGGCCG--------UCCGCGag-CCGCu-------CGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 85100 0.67 0.421835
Target:  5'- aCCGGCAcuacucGGCGCUCGa-GAGCgCCG-Cg -3'
miRNA:   3'- aGGCCGU------CCGCGAGCcgCUCG-GGCaG- -5'
29446 5' -64.7 NC_006151.1 + 70631 0.67 0.421835
Target:  5'- cUCGGC-GGCGCcguggccgCGcGCGAggcGCCCGUCc -3'
miRNA:   3'- aGGCCGuCCGCGa-------GC-CGCU---CGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 102699 0.67 0.421835
Target:  5'- cCCGGCgcGGGCgGCgCGGcCGAGCCgaacacgcgcgaCGUCa -3'
miRNA:   3'- aGGCCG--UCCG-CGaGCC-GCUCGG------------GCAG- -5'
29446 5' -64.7 NC_006151.1 + 17035 0.67 0.419329
Target:  5'- cCCGGCgacgaucacguccaGGGCG-UCGGCGuccgucAGCCCGg- -3'
miRNA:   3'- aGGCCG--------------UCCGCgAGCCGC------UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 121694 0.68 0.413517
Target:  5'- cCCGGCcauGGCGgagCGGCG-GCUCGUg -3'
miRNA:   3'- aGGCCGu--CCGCga-GCCGCuCGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 52396 0.68 0.413517
Target:  5'- -gCGGCGGGCGC-CGcCGcGCCCGa- -3'
miRNA:   3'- agGCCGUCCGCGaGCcGCuCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 71287 0.68 0.4053
Target:  5'- -aCGGCcucGGGgGC-CGGCGAGCaccgCGUCu -3'
miRNA:   3'- agGCCG---UCCgCGaGCCGCUCGg---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.