miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 33999 0.68 0.397188
Target:  5'- cCCGGagGGGCGUccCGGCGcgccGGCCCGg- -3'
miRNA:   3'- aGGCCg-UCCGCGa-GCCGC----UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 37330 0.67 0.437912
Target:  5'- aCCGaCGGGCcgcugcucaccccGCUCGGgGAGCCCu-- -3'
miRNA:   3'- aGGCcGUCCG-------------CGAGCCgCUCGGGcag -5'
29446 5' -64.7 NC_006151.1 + 37453 0.66 0.471087
Target:  5'- gUCCGcCAGGCcgcggcccgcuaccGCgccgCGGcCGGGCCCGUg -3'
miRNA:   3'- -AGGCcGUCCG--------------CGa---GCC-GCUCGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 38384 0.66 0.5009
Target:  5'- gCCGGCGccGGCGg-CGGCGGGCgCCc-- -3'
miRNA:   3'- aGGCCGU--CCGCgaGCCGCUCG-GGcag -5'
29446 5' -64.7 NC_006151.1 + 38779 0.66 0.5009
Target:  5'- aCCGGCuccGGCGCcCGcuCGGGCCCa-- -3'
miRNA:   3'- aGGCCGu--CCGCGaGCc-GCUCGGGcag -5'
29446 5' -64.7 NC_006151.1 + 39801 0.74 0.157477
Target:  5'- aCCGcUGGGgGCUCGGCGccccgcugcGGCCCGUCu -3'
miRNA:   3'- aGGCcGUCCgCGAGCCGC---------UCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 40437 0.69 0.329041
Target:  5'- cCCGGC-GGCGCUugccucccCGGCGccugccuccccGGCCCGg- -3'
miRNA:   3'- aGGCCGuCCGCGA--------GCCGC-----------UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 40581 0.66 0.510099
Target:  5'- -gCGGCGGaGgGCUCGGCG-GCggaggaUCGUCc -3'
miRNA:   3'- agGCCGUC-CgCGAGCCGCuCG------GGCAG- -5'
29446 5' -64.7 NC_006151.1 + 43008 0.68 0.373487
Target:  5'- -gCGGCGGGCGCUUGGCa--CCCcUCc -3'
miRNA:   3'- agGCCGUCCGCGAGCCGcucGGGcAG- -5'
29446 5' -64.7 NC_006151.1 + 46557 0.7 0.29508
Target:  5'- gCCGGCgcccAGGCGCUCcccGCGcagGGCCCGa- -3'
miRNA:   3'- aGGCCG----UCCGCGAGc--CGC---UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 46850 0.69 0.329041
Target:  5'- cCCggGGCGGGC-CUcCGGCGucuAGCUCGUCg -3'
miRNA:   3'- aGG--CCGUCCGcGA-GCCGC---UCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 50373 0.7 0.308328
Target:  5'- gCCGGCGGGgGCgagacGCGGGCCCcgcgGUCc -3'
miRNA:   3'- aGGCCGUCCgCGagc--CGCUCGGG----CAG- -5'
29446 5' -64.7 NC_006151.1 + 50460 0.66 0.473761
Target:  5'- gCCcGCGGGCGCUCGcGCcAGCgCGg- -3'
miRNA:   3'- aGGcCGUCCGCGAGC-CGcUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 51228 0.71 0.252213
Target:  5'- cCCGcGCAGGCggcgcgagcGCUCGGCGcAGCUCcagGUCg -3'
miRNA:   3'- aGGC-CGUCCG---------CGAGCCGC-UCGGG---CAG- -5'
29446 5' -64.7 NC_006151.1 + 51586 0.7 0.31512
Target:  5'- cUCgGGCGGGUGgaCGGCGGGUCaGUa -3'
miRNA:   3'- -AGgCCGUCCGCgaGCCGCUCGGgCAg -5'
29446 5' -64.7 NC_006151.1 + 52396 0.68 0.413517
Target:  5'- -gCGGCGGGCGC-CGcCGcGCCCGa- -3'
miRNA:   3'- agGCCGUCCGCGaGCcGCuCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 52475 0.66 0.473761
Target:  5'- gCCGGUAGGcCGCcgugacggccUCgGGCGccAGCCCGg- -3'
miRNA:   3'- aGGCCGUCC-GCG----------AG-CCGC--UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 53278 0.68 0.38128
Target:  5'- gCCGcGCgugcucgaAGcGCGaCUCGaGCGAGUCCGUCu -3'
miRNA:   3'- aGGC-CG--------UC-CGC-GAGC-CGCUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 53636 0.66 0.491775
Target:  5'- cUUCuGCAGcucGCGCaccgUCGGCGGGCUCGUg -3'
miRNA:   3'- -AGGcCGUC---CGCG----AGCCGCUCGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 53983 0.7 0.29508
Target:  5'- cUCC-GCGGGCGUcgCGGCGAGCucCCGg- -3'
miRNA:   3'- -AGGcCGUCCGCGa-GCCGCUCG--GGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.