miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 54424 0.74 0.153705
Target:  5'- gCUGGCGcGGCGCuUCGGCGAcgaggcGCCCGcCg -3'
miRNA:   3'- aGGCCGU-CCGCG-AGCCGCU------CGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 54698 0.73 0.200016
Target:  5'- gCCGGCAGcGUGCUgGGCcaGGGCCUGg- -3'
miRNA:   3'- aGGCCGUC-CGCGAgCCG--CUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 54993 0.71 0.240944
Target:  5'- gCCGGUgaAGGUGCUCgucgGGCGcaAGCCCGcCg -3'
miRNA:   3'- aGGCCG--UCCGCGAG----CCGC--UCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 55035 0.72 0.218139
Target:  5'- cCCGGCcGGCGCcguggagaagaugcUCGGCGAGgaCCCGg- -3'
miRNA:   3'- aGGCCGuCCGCG--------------AGCCGCUC--GGGCag -5'
29446 5' -64.7 NC_006151.1 + 55222 0.67 0.44738
Target:  5'- uUCgGGCAccacGGCGC-CGGCGcgcAGCCgGUg -3'
miRNA:   3'- -AGgCCGU----CCGCGaGCCGC---UCGGgCAg -5'
29446 5' -64.7 NC_006151.1 + 58340 0.66 0.482727
Target:  5'- cUCCGcGUAGGCGCgc-GCGAaGCUgGUCc -3'
miRNA:   3'- -AGGC-CGUCCGCGagcCGCU-CGGgCAG- -5'
29446 5' -64.7 NC_006151.1 + 58742 0.66 0.499984
Target:  5'- gUCGcGCA-GCGCcgCGGCcaccgcggccgccGAGCCCGUCc -3'
miRNA:   3'- aGGC-CGUcCGCGa-GCCG-------------CUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 59296 0.68 0.404485
Target:  5'- -gCGGCGuGGCGCccgcggcUCaGCGGGCCCG-Cg -3'
miRNA:   3'- agGCCGU-CCGCG-------AGcCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 59478 0.75 0.146405
Target:  5'- cUCCGGCgAGGCGCccUCGaaGAGCCCGg- -3'
miRNA:   3'- -AGGCCG-UCCGCG--AGCcgCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 60151 0.66 0.482727
Target:  5'- cCUGcGaCAGGCGCgcCGGCcAGCCCGa- -3'
miRNA:   3'- aGGC-C-GUCCGCGa-GCCGcUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 63412 0.69 0.33617
Target:  5'- aCgGGCAcGGCGCa-GGCGGGCggcaCGUCg -3'
miRNA:   3'- aGgCCGU-CCGCGagCCGCUCGg---GCAG- -5'
29446 5' -64.7 NC_006151.1 + 63463 0.69 0.329041
Target:  5'- gUCCGGUucugcucgcAGGgGCggCGGCGGcGCCCGa- -3'
miRNA:   3'- -AGGCCG---------UCCgCGa-GCCGCU-CGGGCag -5'
29446 5' -64.7 NC_006151.1 + 63696 0.7 0.31512
Target:  5'- cUgGGCGuGCGCguucgCGGCGAcguggcGCCCGUCg -3'
miRNA:   3'- aGgCCGUcCGCGa----GCCGCU------CGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 63745 0.68 0.389181
Target:  5'- cUCCGGCgcgucggcgGGGCGUccUCGGCGcccCCgCGUCg -3'
miRNA:   3'- -AGGCCG---------UCCGCG--AGCCGCuc-GG-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 64214 0.73 0.200016
Target:  5'- gUCCGGCguGGGCGcCUCGGCGuacagGGCCgCGa- -3'
miRNA:   3'- -AGGCCG--UCCGC-GAGCCGC-----UCGG-GCag -5'
29446 5' -64.7 NC_006151.1 + 64493 0.72 0.214605
Target:  5'- gCCcGCGGGCGCgggCGGCGGGCgCG-Cg -3'
miRNA:   3'- aGGcCGUCCGCGa--GCCGCUCGgGCaG- -5'
29446 5' -64.7 NC_006151.1 + 64848 0.71 0.258008
Target:  5'- cCCGGCgaGGGC-CUCGGCGGagggccgcuGCCCGg- -3'
miRNA:   3'- aGGCCG--UCCGcGAGCCGCU---------CGGGCag -5'
29446 5' -64.7 NC_006151.1 + 65038 0.68 0.365803
Target:  5'- -aCGGCAGGgGgCcCGGCGGcggcgggcGCCCGUUa -3'
miRNA:   3'- agGCCGUCCgC-GaGCCGCU--------CGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 65504 0.68 0.397188
Target:  5'- gCCGGCGGaGCGCgccuccuccgCGGCcAGCagCGUCa -3'
miRNA:   3'- aGGCCGUC-CGCGa---------GCCGcUCGg-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 66787 0.66 0.473761
Target:  5'- -aCGGC-GGCgGCggCGGCGGGgCCCGg- -3'
miRNA:   3'- agGCCGuCCG-CGa-GCCGCUC-GGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.