miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 66865 0.67 0.456084
Target:  5'- gCCGGgGcGGCGCgaagGGCGcGCCCGg- -3'
miRNA:   3'- aGGCCgU-CCGCGag--CCGCuCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 67728 0.7 0.29378
Target:  5'- -aCGGCGcGGCGCacaggcacggcgCGGCGGcCCCGUCg -3'
miRNA:   3'- agGCCGU-CCGCGa-----------GCCGCUcGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 67855 0.66 0.510099
Target:  5'- cCCGGCGagccGGCGCcgaggUGGCGcgcgcgccAGCCCG-Cg -3'
miRNA:   3'- aGGCCGU----CCGCGa----GCCGC--------UCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 67996 0.66 0.473761
Target:  5'- gCCGGCGccgcGGCcacggGCUCGGCGGcGUCCagGUCc -3'
miRNA:   3'- aGGCCGU----CCG-----CGAGCCGCU-CGGG--CAG- -5'
29446 5' -64.7 NC_006151.1 + 68050 0.7 0.301648
Target:  5'- -gCGGCGGGCacggGCUCGGCGAcggGCagGUCg -3'
miRNA:   3'- agGCCGUCCG----CGAGCCGCU---CGggCAG- -5'
29446 5' -64.7 NC_006151.1 + 68765 0.72 0.209153
Target:  5'- gCCGGCGguGGCGCgcgCGGCGAggugcgccgccgcGgCCGUCa -3'
miRNA:   3'- aGGCCGU--CCGCGa--GCCGCU-------------CgGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 69084 0.67 0.464878
Target:  5'- -gCGGCAcGGCcaGCUCGGCGuGCCg--- -3'
miRNA:   3'- agGCCGU-CCG--CGAGCCGCuCGGgcag -5'
29446 5' -64.7 NC_006151.1 + 69798 0.67 0.456084
Target:  5'- aCUGGCggcacAGGCGCUCcaGGCGcuCgCCGUCc -3'
miRNA:   3'- aGGCCG-----UCCGCGAG--CCGCucG-GGCAG- -5'
29446 5' -64.7 NC_006151.1 + 69972 0.72 0.230099
Target:  5'- gCCGcGCGGGCGCUgcagCGGCG-GCagCGUCa -3'
miRNA:   3'- aGGC-CGUCCGCGA----GCCGCuCGg-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 70631 0.67 0.421835
Target:  5'- cUCGGC-GGCGCcguggccgCGcGCGAggcGCCCGUCc -3'
miRNA:   3'- aGGCCGuCCGCGa-------GC-CGCU---CGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 71287 0.68 0.4053
Target:  5'- -aCGGCcucGGGgGC-CGGCGAGCaccgCGUCu -3'
miRNA:   3'- agGCCG---UCCgCGaGCCGCUCGg---GCAG- -5'
29446 5' -64.7 NC_006151.1 + 72048 0.66 0.523094
Target:  5'- gCCGcGCA-GCGuCUCGGCGGcgcgcgccaccacccGCgCCGUCa -3'
miRNA:   3'- aGGC-CGUcCGC-GAGCCGCU---------------CG-GGCAG- -5'
29446 5' -64.7 NC_006151.1 + 72649 0.66 0.491775
Target:  5'- -gCGGCucAGGCGCUCGcGUGcuggaagcAGCCCuUCa -3'
miRNA:   3'- agGCCG--UCCGCGAGC-CGC--------UCGGGcAG- -5'
29446 5' -64.7 NC_006151.1 + 72845 0.66 0.523094
Target:  5'- aCUGGUAcucccguugcucgucGGCGaggCGGCGGcGCCCGUg -3'
miRNA:   3'- aGGCCGU---------------CCGCga-GCCGCU-CGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 72910 0.68 0.365803
Target:  5'- cCCGGCucuuGGCGaccgcCUCGGCGGGCgUGa- -3'
miRNA:   3'- aGGCCGu---CCGC-----GAGCCGCUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 73788 0.66 0.491775
Target:  5'- -gCGGCGGcGCGCaccUCGGCGc-CCaCGUCg -3'
miRNA:   3'- agGCCGUC-CGCG---AGCCGCucGG-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 74455 1.09 0.000449
Target:  5'- cUCCGGCAGGCGCUCGGCGAGCCCGUCg -3'
miRNA:   3'- -AGGCCGUCCGCGAGCCGCUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 75399 0.66 0.482727
Target:  5'- --gGGCGGGUGCgUGcGCGGGUCCGg- -3'
miRNA:   3'- aggCCGUCCGCGaGC-CGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 75447 0.67 0.430253
Target:  5'- gCCGGCGuGGCGCgcguagcggUCGGCG-GCCgGc- -3'
miRNA:   3'- aGGCCGU-CCGCG---------AGCCGCuCGGgCag -5'
29446 5' -64.7 NC_006151.1 + 76818 0.72 0.219668
Target:  5'- --gGGCGGGCGCguagUGGCG-GCCCG-Cg -3'
miRNA:   3'- aggCCGUCCGCGa---GCCGCuCGGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.