miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 106685 0.71 0.246525
Target:  5'- cUCGGCgcgccGGGCGC-CGGCGAccuguacgcGCCCGUg -3'
miRNA:   3'- aGGCCG-----UCCGCGaGCCGCU---------CGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 104260 0.73 0.181912
Target:  5'- cCCGagaacGCcGGCGCggCGGCGGGCCCGcCg -3'
miRNA:   3'- aGGC-----CGuCCGCGa-GCCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 103553 0.68 0.4053
Target:  5'- gCCgGGCAGcCGCUCGGgGcGCUgGUCa -3'
miRNA:   3'- aGG-CCGUCcGCGAGCCgCuCGGgCAG- -5'
29446 5' -64.7 NC_006151.1 + 102699 0.67 0.421835
Target:  5'- cCCGGCgcGGGCgGCgCGGcCGAGCCgaacacgcgcgaCGUCa -3'
miRNA:   3'- aGGCCG--UCCG-CGaGCC-GCUCGG------------GCAG- -5'
29446 5' -64.7 NC_006151.1 + 102602 0.71 0.258008
Target:  5'- gUCgCaGCGGGCGCUCGaGCGGGCgCG-Cg -3'
miRNA:   3'- -AG-GcCGUCCGCGAGC-CGCUCGgGCaG- -5'
29446 5' -64.7 NC_006151.1 + 102543 0.66 0.473761
Target:  5'- -aCGGUgguGGCGCgCGcGCGGGCCCuGUUu -3'
miRNA:   3'- agGCCGu--CCGCGaGC-CGCUCGGG-CAG- -5'
29446 5' -64.7 NC_006151.1 + 101236 0.66 0.510099
Target:  5'- cCCGGCGGGgGCaugugcgccaUCaGCGAGCUcccgaacaagauCGUCu -3'
miRNA:   3'- aGGCCGUCCgCG----------AGcCGCUCGG------------GCAG- -5'
29446 5' -64.7 NC_006151.1 + 100806 0.68 0.397188
Target:  5'- -gUGGCGGGCGaCggcgaGGCGGGCCCc-- -3'
miRNA:   3'- agGCCGUCCGC-Gag---CCGCUCGGGcag -5'
29446 5' -64.7 NC_006151.1 + 100222 0.66 0.510099
Target:  5'- gCC-GCGGGCGCcgUGGcCGAGCgCGUg -3'
miRNA:   3'- aGGcCGUCCGCGa-GCC-GCUCGgGCAg -5'
29446 5' -64.7 NC_006151.1 + 98057 0.69 0.350764
Target:  5'- aCCaGCcccGGGCGCUCGGCcugGGGCUCG-Ca -3'
miRNA:   3'- aGGcCG---UCCGCGAGCCG---CUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 97371 0.72 0.235469
Target:  5'- -gCGGCGGGCGCggcgggGGCGucGGCCuCGUCc -3'
miRNA:   3'- agGCCGUCCGCGag----CCGC--UCGG-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 97290 0.73 0.177618
Target:  5'- -gCGGCGGGCGUgUUGaGCcGGCCCGUCg -3'
miRNA:   3'- agGCCGUCCGCG-AGC-CGcUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 97239 0.71 0.246525
Target:  5'- uUCCGGguGGCGCggccgcgcaugUCGG-GGGCCCa-- -3'
miRNA:   3'- -AGGCCguCCGCG-----------AGCCgCUCGGGcag -5'
29446 5' -64.7 NC_006151.1 + 96800 0.73 0.17677
Target:  5'- cCCGaGCcgGGGCGCgcgggcuuuuagCGGCGGGCCCGcCa -3'
miRNA:   3'- aGGC-CG--UCCGCGa-----------GCCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 94662 0.67 0.456084
Target:  5'- gCCaGCGGGUGCcCGGCGGGCagcuccCCGa- -3'
miRNA:   3'- aGGcCGUCCGCGaGCCGCUCG------GGCag -5'
29446 5' -64.7 NC_006151.1 + 94523 0.71 0.252213
Target:  5'- -gCGGgAGGCGUguaacuucccgUCGGCGGGCUCGgUCa -3'
miRNA:   3'- agGCCgUCCGCG-----------AGCCGCUCGGGC-AG- -5'
29446 5' -64.7 NC_006151.1 + 92652 0.69 0.343411
Target:  5'- gCCGGCaAGGCGCUcgcccugcugcCGGCG-GCCgGg- -3'
miRNA:   3'- aGGCCG-UCCGCGA-----------GCCGCuCGGgCag -5'
29446 5' -64.7 NC_006151.1 + 91742 0.66 0.510099
Target:  5'- aUCgCGGCGGGCGa---GCGGGCUCGg- -3'
miRNA:   3'- -AG-GCCGUCCGCgagcCGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 91618 0.67 0.467534
Target:  5'- gCCGGUgcgcugcAGGgGCUCGcCGuccuccagcacgaagGGCCCGUCg -3'
miRNA:   3'- aGGCCG-------UCCgCGAGCcGC---------------UCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 91233 0.67 0.464878
Target:  5'- ---cGCAGGCgacGCUCGGgGAGCcgggccCCGUCg -3'
miRNA:   3'- aggcCGUCCG---CGAGCCgCUCG------GGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.