miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 91108 0.68 0.364279
Target:  5'- cCCGGCcgcGGCGCccuucgccacggCGGCGAGCuuGg- -3'
miRNA:   3'- aGGCCGu--CCGCGa-----------GCCGCUCGggCag -5'
29446 5' -64.7 NC_006151.1 + 90993 0.73 0.181912
Target:  5'- gCUGGCuGGCGCgcuccagcaCGGCGGuCCCGUCg -3'
miRNA:   3'- aGGCCGuCCGCGa--------GCCGCUcGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 90779 0.67 0.452591
Target:  5'- gUCGGCGGGCGCgcagaagaagaaGGUGGucGCCCG-Ca -3'
miRNA:   3'- aGGCCGUCCGCGag----------CCGCU--CGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 90693 0.67 0.464878
Target:  5'- -gCGGCGGGgGCggCGGaCGcGCCCGcCc -3'
miRNA:   3'- agGCCGUCCgCGa-GCC-GCuCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 90633 0.7 0.288625
Target:  5'- gCCcGCGGGCGCUUGGCGAuggGCgUGUa -3'
miRNA:   3'- aGGcCGUCCGCGAGCCGCU---CGgGCAg -5'
29446 5' -64.7 NC_006151.1 + 89716 0.66 0.5009
Target:  5'- cCCGGC-GGCGC-CGGCcgcGGCCgCGg- -3'
miRNA:   3'- aGGCCGuCCGCGaGCCGc--UCGG-GCag -5'
29446 5' -64.7 NC_006151.1 + 89465 0.68 0.402856
Target:  5'- aCCaGCAGggcccgcgucacguGCGCggCGGCGAGCCgGUa -3'
miRNA:   3'- aGGcCGUC--------------CGCGa-GCCGCUCGGgCAg -5'
29446 5' -64.7 NC_006151.1 + 88862 0.67 0.456084
Target:  5'- cUCCcGCGGGaGCUCcgGGCGcgggGGCUCGUCa -3'
miRNA:   3'- -AGGcCGUCCgCGAG--CCGC----UCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 88089 0.78 0.082607
Target:  5'- -gCGGCAGGUGUagUCGaCGGGCCCGUCg -3'
miRNA:   3'- agGCCGUCCGCG--AGCcGCUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 86565 0.66 0.473761
Target:  5'- uUCCGGCAgcucucGGCGCg-GGCGcGCuCCGa- -3'
miRNA:   3'- -AGGCCGU------CCGCGagCCGCuCG-GGCag -5'
29446 5' -64.7 NC_006151.1 + 86435 0.69 0.350764
Target:  5'- cUCgCGGCGccuGGCGCcCGGCGAGgccCCCGa- -3'
miRNA:   3'- -AG-GCCGU---CCGCGaGCCGCUC---GGGCag -5'
29446 5' -64.7 NC_006151.1 + 85100 0.67 0.421835
Target:  5'- aCCGGCAcuacucGGCGCUCGa-GAGCgCCG-Cg -3'
miRNA:   3'- aGGCCGU------CCGCGAGCcgCUCG-GGCaG- -5'
29446 5' -64.7 NC_006151.1 + 84426 0.67 0.464878
Target:  5'- --aGGCGGcGCGCggCGGCGcgcGGCCCauGUCc -3'
miRNA:   3'- aggCCGUC-CGCGa-GCCGC---UCGGG--CAG- -5'
29446 5' -64.7 NC_006151.1 + 83562 0.73 0.177618
Target:  5'- cUCgGGCGGGCcCUCGaccGCGGGCCCGa- -3'
miRNA:   3'- -AGgCCGUCCGcGAGC---CGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 83358 0.67 0.421835
Target:  5'- cCCGGCgcgcgcgcGGGCGCgcaGGCGccgcagguGCUCGUCc -3'
miRNA:   3'- aGGCCG--------UCCGCGag-CCGCu-------CGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 82615 0.69 0.343411
Target:  5'- cCCGcgcGCGGGCGCcgCGGUGGGCgCGg- -3'
miRNA:   3'- aGGC---CGUCCGCGa-GCCGCUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 82421 0.7 0.29508
Target:  5'- cCCGagaggcGCGGGCGCUCGcGCGGGCgCUG-Ca -3'
miRNA:   3'- aGGC------CGUCCGCGAGC-CGCUCG-GGCaG- -5'
29446 5' -64.7 NC_006151.1 + 81777 0.83 0.037301
Target:  5'- aCCGGgAcGCGCUCGGCGcGCCCGUCg -3'
miRNA:   3'- aGGCCgUcCGCGAGCCGCuCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 81434 0.67 0.456084
Target:  5'- gUCgCGGCGcagcgagacGGCGCaCGGCGAGaggaCGUCg -3'
miRNA:   3'- -AG-GCCGU---------CCGCGaGCCGCUCgg--GCAG- -5'
29446 5' -64.7 NC_006151.1 + 81368 0.74 0.153705
Target:  5'- cCCGGCGGGCGC-CaGcGCGAGCCgCGcCg -3'
miRNA:   3'- aGGCCGUCCGCGaG-C-CGCUCGG-GCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.