miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 132039 0.66 0.510099
Target:  5'- gCCGGC-GGCGCgCGGC-AGCgCGg- -3'
miRNA:   3'- aGGCCGuCCGCGaGCCGcUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 141626 0.66 0.510099
Target:  5'- aUCgGGCGGGuCGCUgccgcggcggcgCGGCGGGgcCCCG-Cg -3'
miRNA:   3'- -AGgCCGUCC-GCGA------------GCCGCUC--GGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 67855 0.66 0.510099
Target:  5'- cCCGGCGagccGGCGCcgaggUGGCGcgcgcgccAGCCCG-Cg -3'
miRNA:   3'- aGGCCGU----CCGCGa----GCCGC--------UCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 129710 0.66 0.518438
Target:  5'- gCCGaGCAGGCaguugagcagcagGUUC-GCGGGCCCG-Cg -3'
miRNA:   3'- aGGC-CGUCCG-------------CGAGcCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 72845 0.66 0.523094
Target:  5'- aCUGGUAcucccguugcucgucGGCGaggCGGCGGcGCCCGUg -3'
miRNA:   3'- aGGCCGU---------------CCGCga-GCCGCU-CGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 89716 0.66 0.5009
Target:  5'- cCCGGC-GGCGC-CGGCcgcGGCCgCGg- -3'
miRNA:   3'- aGGCCGuCCGCGaGCCGc--UCGG-GCag -5'
29446 5' -64.7 NC_006151.1 + 38779 0.66 0.5009
Target:  5'- aCCGGCuccGGCGCcCGcuCGGGCCCa-- -3'
miRNA:   3'- aGGCCGu--CCGCGaGCc-GCUCGGGcag -5'
29446 5' -64.7 NC_006151.1 + 123235 0.66 0.480028
Target:  5'- uUCCGcGCAcGGCGCgcguucugCGaggccgccgcgcgcGCGGGCaCCGUCg -3'
miRNA:   3'- -AGGC-CGU-CCGCGa-------GC--------------CGCUCG-GGCAG- -5'
29446 5' -64.7 NC_006151.1 + 58340 0.66 0.482727
Target:  5'- cUCCGcGUAGGCGCgc-GCGAaGCUgGUCc -3'
miRNA:   3'- -AGGC-CGUCCGCGagcCGCU-CGGgCAG- -5'
29446 5' -64.7 NC_006151.1 + 60151 0.66 0.482727
Target:  5'- cCUGcGaCAGGCGCgcCGGCcAGCCCGa- -3'
miRNA:   3'- aGGC-C-GUCCGCGa-GCCGcUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 130946 0.66 0.482727
Target:  5'- -gCGGCGGGgGgUCGcGCGGGCgCGg- -3'
miRNA:   3'- agGCCGUCCgCgAGC-CGCUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 75399 0.66 0.482727
Target:  5'- --gGGCGGGUGCgUGcGCGGGUCCGg- -3'
miRNA:   3'- aggCCGUCCGCGaGC-CGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 130307 0.66 0.486337
Target:  5'- -aCGGCGcggagcgcgcgcgccGcGCGCUCGGgGAGCUCG-Cg -3'
miRNA:   3'- agGCCGU---------------C-CGCGAGCCgCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 53636 0.66 0.491775
Target:  5'- cUUCuGCAGcucGCGCaccgUCGGCGGGCUCGUg -3'
miRNA:   3'- -AGGcCGUC---CGCG----AGCCGCUCGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 72649 0.66 0.491775
Target:  5'- -gCGGCucAGGCGCUCGcGUGcuggaagcAGCCCuUCa -3'
miRNA:   3'- agGCCG--UCCGCGAGC-CGC--------UCGGGcAG- -5'
29446 5' -64.7 NC_006151.1 + 73788 0.66 0.491775
Target:  5'- -gCGGCGGcGCGCaccUCGGCGc-CCaCGUCg -3'
miRNA:   3'- agGCCGUC-CGCG---AGCCGCucGG-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 107541 0.66 0.491775
Target:  5'- cCCGGCGGcccCGC-CGGCGccgccGCCCGcCa -3'
miRNA:   3'- aGGCCGUCc--GCGaGCCGCu----CGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 127388 0.66 0.491775
Target:  5'- -gUGGCGGGgGCcgCGGCcgagucgacggGAGCCCG-Cg -3'
miRNA:   3'- agGCCGUCCgCGa-GCCG-----------CUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 58742 0.66 0.499984
Target:  5'- gUCGcGCA-GCGCcgCGGCcaccgcggccgccGAGCCCGUCc -3'
miRNA:   3'- aGGC-CGUcCGCGa-GCCG-------------CUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 38384 0.66 0.5009
Target:  5'- gCCGGCGccGGCGg-CGGCGGGCgCCc-- -3'
miRNA:   3'- aGGCCGU--CCGCgaGCCGCUCG-GGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.