miRNA display CGI


Results 101 - 120 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 90779 0.67 0.452591
Target:  5'- gUCGGCGGGCGCgcagaagaagaaGGUGGucGCCCG-Ca -3'
miRNA:   3'- aGGCCGUCCGCGag----------CCGCU--CGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 128527 0.67 0.44738
Target:  5'- cCCGaGCccgAGGC-CaCGGCGGGCCCGcCg -3'
miRNA:   3'- aGGC-CG---UCCGcGaGCCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 118221 0.67 0.44738
Target:  5'- -gUGGCGGGCGCcCGGaccacCGGGCUCGg- -3'
miRNA:   3'- agGCCGUCCGCGaGCC-----GCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 55222 0.67 0.44738
Target:  5'- uUCgGGCAccacGGCGC-CGGCGcgcAGCCgGUg -3'
miRNA:   3'- -AGgCCGU----CCGCGaGCCGC---UCGGgCAg -5'
29446 5' -64.7 NC_006151.1 + 33921 0.67 0.44738
Target:  5'- gUCCGGCGGGCGgaUCGa--GGCCCG-Cg -3'
miRNA:   3'- -AGGCCGUCCGCg-AGCcgcUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 21604 0.67 0.464878
Target:  5'- -aCGGCGuGGCGg-CGGCGuaGGCCCG-Cg -3'
miRNA:   3'- agGCCGU-CCGCgaGCCGC--UCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 33233 0.67 0.464878
Target:  5'- cCCGGCGGGCGggaGG-GGGUCCGg- -3'
miRNA:   3'- aGGCCGUCCGCgagCCgCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 116316 0.66 0.473761
Target:  5'- cCCGaugacGCc-GCGCUCGcGCGGGCCCG-Cg -3'
miRNA:   3'- aGGC-----CGucCGCGAGC-CGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 86565 0.66 0.473761
Target:  5'- uUCCGGCAgcucucGGCGCg-GGCGcGCuCCGa- -3'
miRNA:   3'- -AGGCCGU------CCGCGagCCGCuCG-GGCag -5'
29446 5' -64.7 NC_006151.1 + 67996 0.66 0.473761
Target:  5'- gCCGGCGccgcGGCcacggGCUCGGCGGcGUCCagGUCc -3'
miRNA:   3'- aGGCCGU----CCG-----CGAGCCGCU-CGGG--CAG- -5'
29446 5' -64.7 NC_006151.1 + 66787 0.66 0.473761
Target:  5'- -aCGGC-GGCgGCggCGGCGGGgCCCGg- -3'
miRNA:   3'- agGCCGuCCG-CGa-GCCGCUC-GGGCag -5'
29446 5' -64.7 NC_006151.1 + 52475 0.66 0.473761
Target:  5'- gCCGGUAGGcCGCcgugacggccUCgGGCGccAGCCCGg- -3'
miRNA:   3'- aGGCCGUCC-GCG----------AG-CCGC--UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 4218 0.66 0.473761
Target:  5'- -gCGGCcgGGGCGCg-GGCGGGCgCGg- -3'
miRNA:   3'- agGCCG--UCCGCGagCCGCUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 77236 0.66 0.473761
Target:  5'- gCCGGgAGGCGCccccCGGCGGGUuuaaaggagUgGUCg -3'
miRNA:   3'- aGGCCgUCCGCGa---GCCGCUCG---------GgCAG- -5'
29446 5' -64.7 NC_006151.1 + 50460 0.66 0.473761
Target:  5'- gCCcGCGGGCGCUCGcGCcAGCgCGg- -3'
miRNA:   3'- aGGcCGUCCGCGAGC-CGcUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 37453 0.66 0.471087
Target:  5'- gUCCGcCAGGCcgcggcccgcuaccGCgccgCGGcCGGGCCCGUg -3'
miRNA:   3'- -AGGCcGUCCG--------------CGa---GCC-GCUCGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 91618 0.67 0.467534
Target:  5'- gCCGGUgcgcugcAGGgGCUCGcCGuccuccagcacgaagGGCCCGUCg -3'
miRNA:   3'- aGGCCG-------UCCgCGAGCcGC---------------UCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 69084 0.67 0.464878
Target:  5'- -gCGGCAcGGCcaGCUCGGCGuGCCg--- -3'
miRNA:   3'- agGCCGU-CCG--CGAGCCGCuCGGgcag -5'
29446 5' -64.7 NC_006151.1 + 91233 0.67 0.464878
Target:  5'- ---cGCAGGCgacGCUCGGgGAGCcgggccCCGUCg -3'
miRNA:   3'- aggcCGUCCG---CGAGCCgCUCG------GGCAG- -5'
29446 5' -64.7 NC_006151.1 + 84426 0.67 0.464878
Target:  5'- --aGGCGGcGCGCggCGGCGcgcGGCCCauGUCc -3'
miRNA:   3'- aggCCGUC-CGCGa-GCCGC---UCGGG--CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.