miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 73788 0.66 0.491775
Target:  5'- -gCGGCGGcGCGCaccUCGGCGc-CCaCGUCg -3'
miRNA:   3'- agGCCGUC-CGCG---AGCCGCucGG-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 107541 0.66 0.491775
Target:  5'- cCCGGCGGcccCGC-CGGCGccgccGCCCGcCa -3'
miRNA:   3'- aGGCCGUCc--GCGaGCCGCu----CGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 127388 0.66 0.491775
Target:  5'- -gUGGCGGGgGCcgCGGCcgagucgacggGAGCCCG-Cg -3'
miRNA:   3'- agGCCGUCCgCGa-GCCG-----------CUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 130307 0.66 0.486337
Target:  5'- -aCGGCGcggagcgcgcgcgccGcGCGCUCGGgGAGCUCG-Cg -3'
miRNA:   3'- agGCCGU---------------C-CGCGAGCCgCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 58340 0.66 0.482727
Target:  5'- cUCCGcGUAGGCGCgc-GCGAaGCUgGUCc -3'
miRNA:   3'- -AGGC-CGUCCGCGagcCGCU-CGGgCAG- -5'
29446 5' -64.7 NC_006151.1 + 60151 0.66 0.482727
Target:  5'- cCUGcGaCAGGCGCgcCGGCcAGCCCGa- -3'
miRNA:   3'- aGGC-C-GUCCGCGa-GCCGcUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 130946 0.66 0.482727
Target:  5'- -gCGGCGGGgGgUCGcGCGGGCgCGg- -3'
miRNA:   3'- agGCCGUCCgCgAGC-CGCUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 75399 0.66 0.482727
Target:  5'- --gGGCGGGUGCgUGcGCGGGUCCGg- -3'
miRNA:   3'- aggCCGUCCGCGaGC-CGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 123235 0.66 0.480028
Target:  5'- uUCCGcGCAcGGCGCgcguucugCGaggccgccgcgcgcGCGGGCaCCGUCg -3'
miRNA:   3'- -AGGC-CGU-CCGCGa-------GC--------------CGCUCG-GGCAG- -5'
29446 5' -64.7 NC_006151.1 + 50460 0.66 0.473761
Target:  5'- gCCcGCGGGCGCUCGcGCcAGCgCGg- -3'
miRNA:   3'- aGGcCGUCCGCGAGC-CGcUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 77236 0.66 0.473761
Target:  5'- gCCGGgAGGCGCccccCGGCGGGUuuaaaggagUgGUCg -3'
miRNA:   3'- aGGCCgUCCGCGa---GCCGCUCG---------GgCAG- -5'
29446 5' -64.7 NC_006151.1 + 4218 0.66 0.473761
Target:  5'- -gCGGCcgGGGCGCg-GGCGGGCgCGg- -3'
miRNA:   3'- agGCCG--UCCGCGagCCGCUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 52475 0.66 0.473761
Target:  5'- gCCGGUAGGcCGCcgugacggccUCgGGCGccAGCCCGg- -3'
miRNA:   3'- aGGCCGUCC-GCG----------AG-CCGC--UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 66787 0.66 0.473761
Target:  5'- -aCGGC-GGCgGCggCGGCGGGgCCCGg- -3'
miRNA:   3'- agGCCGuCCG-CGa-GCCGCUC-GGGCag -5'
29446 5' -64.7 NC_006151.1 + 67996 0.66 0.473761
Target:  5'- gCCGGCGccgcGGCcacggGCUCGGCGGcGUCCagGUCc -3'
miRNA:   3'- aGGCCGU----CCG-----CGAGCCGCU-CGGG--CAG- -5'
29446 5' -64.7 NC_006151.1 + 86565 0.66 0.473761
Target:  5'- uUCCGGCAgcucucGGCGCg-GGCGcGCuCCGa- -3'
miRNA:   3'- -AGGCCGU------CCGCGagCCGCuCG-GGCag -5'
29446 5' -64.7 NC_006151.1 + 116316 0.66 0.473761
Target:  5'- cCCGaugacGCc-GCGCUCGcGCGGGCCCG-Cg -3'
miRNA:   3'- aGGC-----CGucCGCGAGC-CGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 23456 0.66 0.473761
Target:  5'- cCCggGGCGGGUGaUC-GUGAGCCCGUg -3'
miRNA:   3'- aGG--CCGUCCGCgAGcCGCUCGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 102543 0.66 0.473761
Target:  5'- -aCGGUgguGGCGCgCGcGCGGGCCCuGUUu -3'
miRNA:   3'- agGCCGu--CCGCGaGC-CGCUCGGG-CAG- -5'
29446 5' -64.7 NC_006151.1 + 37453 0.66 0.471087
Target:  5'- gUCCGcCAGGCcgcggcccgcuaccGCgccgCGGcCGGGCCCGUg -3'
miRNA:   3'- -AGGCcGUCCG--------------CGa---GCC-GCUCGGGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.