miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 3' -56.9 NC_006151.1 + 24521 0.67 0.827118
Target:  5'- gCGcCgCCAcGuuGCAgCGCGCGGCCCc -3'
miRNA:   3'- -GCaGaGGU-CuuUGUgGUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 59508 0.67 0.827118
Target:  5'- gGcCUCCGcGAcgcgcgcgcAGCGCCGCGUgagGGCCCa -3'
miRNA:   3'- gCaGAGGU-CU---------UUGUGGUGCG---CCGGGa -5'
29449 3' -56.9 NC_006151.1 + 99604 0.67 0.827118
Target:  5'- gCGcCgcgCCGGGcuggcgcacAGCGCCGCGCgcgaGGCCCUc -3'
miRNA:   3'- -GCaGa--GGUCU---------UUGUGGUGCG----CCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 134781 0.67 0.809092
Target:  5'- uCGgCUCCAcGGGCcugugagGCCGCgGCGGCCCg -3'
miRNA:   3'- -GCaGAGGUcUUUG-------UGGUG-CGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 27160 0.67 0.809967
Target:  5'- aCGUCggcCCcGAGGCGCCGCGUgucggGGCgCCa -3'
miRNA:   3'- -GCAGa--GGuCUUUGUGGUGCG-----CCG-GGa -5'
29449 3' -56.9 NC_006151.1 + 87470 0.67 0.809967
Target:  5'- cCGgCUCCAGcAGCggcaGCCGcCGCGGCCg- -3'
miRNA:   3'- -GCaGAGGUCuUUG----UGGU-GCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 97557 0.67 0.809967
Target:  5'- cCGUCgucgCCGccGAGGCGCagcuCGCGGUCCa -3'
miRNA:   3'- -GCAGa---GGU--CUUUGUGgu--GCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 92121 0.67 0.817768
Target:  5'- -aUCUUCGGGAACgGCCgcaucgcGCGCGGCgCCa -3'
miRNA:   3'- gcAGAGGUCUUUG-UGG-------UGCGCCG-GGa -5'
29449 3' -56.9 NC_006151.1 + 6543 0.66 0.880542
Target:  5'- aGUCUUCAGAGuccGCGCCGgaGCGGagacggucggaucCCCUc -3'
miRNA:   3'- gCAGAGGUCUU---UGUGGUg-CGCC-------------GGGA- -5'
29449 3' -56.9 NC_006151.1 + 8953 0.66 0.874127
Target:  5'- gGUC-CCGGuccCACgCGCGCGcGCCCc -3'
miRNA:   3'- gCAGaGGUCuuuGUG-GUGCGC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 113893 0.66 0.866794
Target:  5'- uCGUCggCCGcGcgGCGCaagacgcugacgCGCGCGGCCCg -3'
miRNA:   3'- -GCAGa-GGU-CuuUGUG------------GUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 96459 0.66 0.866794
Target:  5'- ---gUCCAGGucCGCCuCGCGGCuCCg -3'
miRNA:   3'- gcagAGGUCUuuGUGGuGCGCCG-GGa -5'
29449 3' -56.9 NC_006151.1 + 68025 0.66 0.866794
Target:  5'- ---gUCCAGGu---CCAgGCGGCCCg -3'
miRNA:   3'- gcagAGGUCUuuguGGUgCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 66747 0.66 0.859253
Target:  5'- gCGgcgCUCCuuccGcGACGCCGCGaCGGCCg- -3'
miRNA:   3'- -GCa--GAGGu---CuUUGUGGUGC-GCCGGga -5'
29449 3' -56.9 NC_006151.1 + 37523 0.66 0.859253
Target:  5'- --aCUCgaGGAAGCAgCACGaGGCCCUc -3'
miRNA:   3'- gcaGAGg-UCUUUGUgGUGCgCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 112402 0.66 0.859253
Target:  5'- gGcCUCCGGGAuCGCCGCGCGcagaucgaccGCCg- -3'
miRNA:   3'- gCaGAGGUCUUuGUGGUGCGC----------CGGga -5'
29449 3' -56.9 NC_006151.1 + 38509 0.66 0.843566
Target:  5'- --cCUCCGGcuACGCCAgcucccccgcCGcCGGCCCg -3'
miRNA:   3'- gcaGAGGUCuuUGUGGU----------GC-GCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 10308 0.66 0.859253
Target:  5'- gCGUCcCCGGcguCAUCACGCGGgaCCCc -3'
miRNA:   3'- -GCAGaGGUCuuuGUGGUGCGCC--GGGa -5'
29449 3' -56.9 NC_006151.1 + 141406 0.66 0.851508
Target:  5'- gCGUgUCCGGcGAUcgguGCgGgCGCGGCCCg -3'
miRNA:   3'- -GCAgAGGUCuUUG----UGgU-GCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 62375 0.66 0.851508
Target:  5'- uCGUCaUCgGGAcGCGcgccguCCugGCGGUCCUg -3'
miRNA:   3'- -GCAG-AGgUCUuUGU------GGugCGCCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.