miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 3' -56.9 NC_006151.1 + 109090 0.69 0.725873
Target:  5'- aGUCggccCCGGAGGCccagugaggcgaGCCGC-CGGCCCg -3'
miRNA:   3'- gCAGa---GGUCUUUG------------UGGUGcGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 4384 0.69 0.734683
Target:  5'- uCGcCUCCccggcgcGGggGucCGCgGCGCGGCCCg -3'
miRNA:   3'- -GCaGAGG-------UCuuU--GUGgUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 69365 0.69 0.735658
Target:  5'- gCGUCcagCCAGucGAGCGCCGucaGCGGCCg- -3'
miRNA:   3'- -GCAGa--GGUC--UUUGUGGUg--CGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 73378 0.68 0.745353
Target:  5'- cCGUCa-CGGggGCGCgcaGCGCGGCCg- -3'
miRNA:   3'- -GCAGagGUCuuUGUGg--UGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 52085 0.68 0.761606
Target:  5'- cCGUCUgCAGcGccgucgagagcagcGCGCCGCGCaGCCCc -3'
miRNA:   3'- -GCAGAgGUCuU--------------UGUGGUGCGcCGGGa -5'
29449 3' -56.9 NC_006151.1 + 54610 0.68 0.764441
Target:  5'- gGUC-CCGGu-GCGCCGgGCGcGCCCc -3'
miRNA:   3'- gCAGaGGUCuuUGUGGUgCGC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 94718 0.68 0.764441
Target:  5'- gCG-CUCCAGccGCGCCACGgCGuCCCg -3'
miRNA:   3'- -GCaGAGGUCuuUGUGGUGC-GCcGGGa -5'
29449 3' -56.9 NC_006151.1 + 118928 0.68 0.773815
Target:  5'- gCGUCcgUCAuGAGCGCCgACGCGGCgCUg -3'
miRNA:   3'- -GCAGa-GGUcUUUGUGG-UGCGCCGgGA- -5'
29449 3' -56.9 NC_006151.1 + 39837 0.68 0.773815
Target:  5'- uCGUCUCCugcggccgccGGGGccuCGCCGagcucCGCGGCCCc -3'
miRNA:   3'- -GCAGAGG----------UCUUu--GUGGU-----GCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 68274 0.68 0.773815
Target:  5'- gGUCgcggcgCCGG--GCGCCACgGCGGCCa- -3'
miRNA:   3'- gCAGa-----GGUCuuUGUGGUG-CGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 101368 0.68 0.783063
Target:  5'- gGUUUCCAGAGcacgcagauCACgGCGCGcGCCUUc -3'
miRNA:   3'- gCAGAGGUCUUu--------GUGgUGCGC-CGGGA- -5'
29449 3' -56.9 NC_006151.1 + 78709 0.68 0.791272
Target:  5'- uCGUCgCCGcgacggcgcccguGggGCGCgCGCuGCGGCCCa -3'
miRNA:   3'- -GCAGaGGU-------------CuuUGUG-GUG-CGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 59353 0.68 0.791272
Target:  5'- aGgg-CCGcgcgcacGggGCGCCGCGCGGCCg- -3'
miRNA:   3'- gCagaGGU-------CuuUGUGGUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 38842 0.67 0.801148
Target:  5'- gCGUCccggCCGgcGAGAC-CCAcacgcCGCGGCCCUc -3'
miRNA:   3'- -GCAGa---GGU--CUUUGuGGU-----GCGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 134781 0.67 0.809092
Target:  5'- uCGgCUCCAcGGGCcugugagGCCGCgGCGGCCCg -3'
miRNA:   3'- -GCaGAGGUcUUUG-------UGGUG-CGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 27160 0.67 0.809967
Target:  5'- aCGUCggcCCcGAGGCGCCGCGUgucggGGCgCCa -3'
miRNA:   3'- -GCAGa--GGuCUUUGUGGUGCG-----CCG-GGa -5'
29449 3' -56.9 NC_006151.1 + 87470 0.67 0.809967
Target:  5'- cCGgCUCCAGcAGCggcaGCCGcCGCGGCCg- -3'
miRNA:   3'- -GCaGAGGUCuUUG----UGGU-GCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 97557 0.67 0.809967
Target:  5'- cCGUCgucgCCGccGAGGCGCagcuCGCGGUCCa -3'
miRNA:   3'- -GCAGa---GGU--CUUUGUGgu--GCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 92121 0.67 0.817768
Target:  5'- -aUCUUCGGGAACgGCCgcaucgcGCGCGGCgCCa -3'
miRNA:   3'- gcAGAGGUCUUUG-UGG-------UGCGCCG-GGa -5'
29449 3' -56.9 NC_006151.1 + 59508 0.67 0.827118
Target:  5'- gGcCUCCGcGAcgcgcgcgcAGCGCCGCGUgagGGCCCa -3'
miRNA:   3'- gCaGAGGU-CU---------UUGUGGUGCG---CCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.