miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 3' -56.9 NC_006151.1 + 83226 0.67 0.835434
Target:  5'- gGUCUggUC-GAAGCGCgGCGCGcGCCCc -3'
miRNA:   3'- gCAGA--GGuCUUUGUGgUGCGC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 86076 0.67 0.83461
Target:  5'- aGUCUCCGcgcgcgcgccgccgcCGCCAUGgGGCCCg -3'
miRNA:   3'- gCAGAGGUcuuu-----------GUGGUGCgCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 87350 0.75 0.404776
Target:  5'- gGcCUCCAGG---GCCugGCGGCCCc -3'
miRNA:   3'- gCaGAGGUCUuugUGGugCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 87470 0.67 0.809967
Target:  5'- cCGgCUCCAGcAGCggcaGCCGcCGCGGCCg- -3'
miRNA:   3'- -GCaGAGGUCuUUG----UGGU-GCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 87582 0.66 0.842761
Target:  5'- aCGUCUCCGccGGcaccaucGACGCCAgcucggccgcCGUGGCCUg -3'
miRNA:   3'- -GCAGAGGU--CU-------UUGUGGU----------GCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 88911 0.66 0.881244
Target:  5'- gCGUCgggcgagCGGAAGCGCC-CGCGGCg-- -3'
miRNA:   3'- -GCAGag-----GUCUUUGUGGuGCGCCGgga -5'
29449 3' -56.9 NC_006151.1 + 89705 0.66 0.881244
Target:  5'- gCGUCcaggaacCCGGcgGCGCCGgcCGCGGCCg- -3'
miRNA:   3'- -GCAGa------GGUCuuUGUGGU--GCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 91406 0.69 0.696073
Target:  5'- aCGUUgcCCAGGAACACgGCcuGgGGCCCg -3'
miRNA:   3'- -GCAGa-GGUCUUUGUGgUG--CgCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 92121 0.67 0.817768
Target:  5'- -aUCUUCGGGAACgGCCgcaucgcGCGCGGCgCCa -3'
miRNA:   3'- gcAGAGGUCUUUG-UGG-------UGCGCCG-GGa -5'
29449 3' -56.9 NC_006151.1 + 94718 0.68 0.764441
Target:  5'- gCG-CUCCAGccGCGCCACGgCGuCCCg -3'
miRNA:   3'- -GCaGAGGUCuuUGUGGUGC-GCcGGGa -5'
29449 3' -56.9 NC_006151.1 + 96459 0.66 0.866794
Target:  5'- ---gUCCAGGucCGCCuCGCGGCuCCg -3'
miRNA:   3'- gcagAGGUCUuuGUGGuGCGCCG-GGa -5'
29449 3' -56.9 NC_006151.1 + 97557 0.67 0.809967
Target:  5'- cCGUCgucgCCGccGAGGCGCagcuCGCGGUCCa -3'
miRNA:   3'- -GCAGa---GGU--CUUUGUGgu--GCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 99604 0.67 0.827118
Target:  5'- gCGcCgcgCCGGGcuggcgcacAGCGCCGCGCgcgaGGCCCUc -3'
miRNA:   3'- -GCaGa--GGUCU---------UUGUGGUGCG----CCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 100502 0.66 0.859253
Target:  5'- cCGUgUUCCGGAcGCugugcgccgACCACGCGcGCCUg -3'
miRNA:   3'- -GCA-GAGGUCUuUG---------UGGUGCGC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 101368 0.68 0.783063
Target:  5'- gGUUUCCAGAGcacgcagauCACgGCGCGcGCCUUc -3'
miRNA:   3'- gCAGAGGUCUUu--------GUGgUGCGC-CGGGA- -5'
29449 3' -56.9 NC_006151.1 + 102401 0.66 0.881244
Target:  5'- gGUCg-CGGcgcGCGUCGCGCGGCCCg -3'
miRNA:   3'- gCAGagGUCuu-UGUGGUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 102529 0.73 0.48514
Target:  5'- gCGUCUacgaCCAGAcggugguGGCGCgCGCGCGGgCCCUg -3'
miRNA:   3'- -GCAGA----GGUCU-------UUGUG-GUGCGCC-GGGA- -5'
29449 3' -56.9 NC_006151.1 + 103278 0.71 0.614901
Target:  5'- aCGUgCUgagCCAgGAGACGCgCGCGCGGCUCg -3'
miRNA:   3'- -GCA-GA---GGU-CUUUGUG-GUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 109090 0.69 0.725873
Target:  5'- aGUCggccCCGGAGGCccagugaggcgaGCCGC-CGGCCCg -3'
miRNA:   3'- gCAGa---GGUCUUUG------------UGGUGcGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 109529 0.78 0.276733
Target:  5'- cCGUCUcagcagcgccccCCGGAGGCGCCguggACGUGGCCCg -3'
miRNA:   3'- -GCAGA------------GGUCUUUGUGG----UGCGCCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.