miRNA display CGI


Results 81 - 100 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 3' -56.9 NC_006151.1 + 109795 0.67 0.835434
Target:  5'- -cUCccgCCGGAGuuuGCGCCGC-CGGCCCc -3'
miRNA:   3'- gcAGa--GGUCUU---UGUGGUGcGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 112402 0.66 0.859253
Target:  5'- gGcCUCCGGGAuCGCCGCGCGcagaucgaccGCCg- -3'
miRNA:   3'- gCaGAGGUCUUuGUGGUGCGC----------CGGga -5'
29449 3' -56.9 NC_006151.1 + 113893 0.66 0.866794
Target:  5'- uCGUCggCCGcGcgGCGCaagacgcugacgCGCGCGGCCCg -3'
miRNA:   3'- -GCAGa-GGU-CuuUGUG------------GUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 114150 0.72 0.534475
Target:  5'- gCGgCUCgGGcgcAGCgACCGCGCGGCCCUc -3'
miRNA:   3'- -GCaGAGgUCu--UUG-UGGUGCGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 117246 0.66 0.843566
Target:  5'- aCGUCggcgggCCcGAGGCGCgggccgCGCGCGGCCg- -3'
miRNA:   3'- -GCAGa-----GGuCUUUGUG------GUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 117781 0.71 0.60473
Target:  5'- aGgCUCCGGGcggGGCGCCACGCccggcggggcggGGCCCc -3'
miRNA:   3'- gCaGAGGUCU---UUGUGGUGCG------------CCGGGa -5'
29449 3' -56.9 NC_006151.1 + 118462 0.66 0.881244
Target:  5'- uGg--CCGcGGACGCgCACGCGGCCUa -3'
miRNA:   3'- gCagaGGUcUUUGUG-GUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 118928 0.68 0.773815
Target:  5'- gCGUCcgUCAuGAGCGCCgACGCGGCgCUg -3'
miRNA:   3'- -GCAGa-GGUcUUUGUGG-UGCGCCGgGA- -5'
29449 3' -56.9 NC_006151.1 + 119082 0.69 0.696073
Target:  5'- cCGUCUCgCAGGccgcggcgcucGGCgcguacgugaGCCGCGCGGCCg- -3'
miRNA:   3'- -GCAGAG-GUCU-----------UUG----------UGGUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 120325 0.7 0.645461
Target:  5'- aGcCUCUc-GGACGCCGCGCGcGCCCg -3'
miRNA:   3'- gCaGAGGucUUUGUGGUGCGC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 122541 0.66 0.881244
Target:  5'- aCGUgUUCCGGcc-CGCCuCGCGGCgCCUg -3'
miRNA:   3'- -GCA-GAGGUCuuuGUGGuGCGCCG-GGA- -5'
29449 3' -56.9 NC_006151.1 + 124278 0.75 0.39628
Target:  5'- uCGUCacgaccguguggUCCGGGAGCACgUACGCGGCCa- -3'
miRNA:   3'- -GCAG------------AGGUCUUUGUG-GUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 128576 0.7 0.675926
Target:  5'- gCGcCUCgGGcGACAucgucUCGCGCGGCCCg -3'
miRNA:   3'- -GCaGAGgUCuUUGU-----GGUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 130449 0.66 0.843566
Target:  5'- gCGgcgCCAGAAACAUgGCGUGGUgCa -3'
miRNA:   3'- -GCagaGGUCUUUGUGgUGCGCCGgGa -5'
29449 3' -56.9 NC_006151.1 + 130717 0.71 0.594578
Target:  5'- gCGgC-CCGGggGC-CCGCGCGGCCg- -3'
miRNA:   3'- -GCaGaGGUCuuUGuGGUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 133322 0.7 0.635274
Target:  5'- cCGUgUCgAGgcGCGCCGgGCGGCCg- -3'
miRNA:   3'- -GCAgAGgUCuuUGUGGUgCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 134746 0.66 0.866794
Target:  5'- uGUCgccCCgAGcAGCGCgCGCGgGGCCCg -3'
miRNA:   3'- gCAGa--GG-UCuUUGUG-GUGCgCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 134781 0.67 0.809092
Target:  5'- uCGgCUCCAcGGGCcugugagGCCGCgGCGGCCCg -3'
miRNA:   3'- -GCaGAGGUcUUUG-------UGGUG-CGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 135349 0.67 0.835434
Target:  5'- aCGUgUCCGcGAGcCGCCGCGCguuGGCCg- -3'
miRNA:   3'- -GCAgAGGU-CUUuGUGGUGCG---CCGGga -5'
29449 3' -56.9 NC_006151.1 + 135478 0.66 0.874127
Target:  5'- gCGUgUCCgcgcGGGccaGGCGgCGCGCGGCCUc -3'
miRNA:   3'- -GCAgAGG----UCU---UUGUgGUGCGCCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.