miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 3' -56.9 NC_006151.1 + 81981 0.66 0.881244
Target:  5'- aCGgC-CCGGGcuGCACCACgGCGGCCa- -3'
miRNA:   3'- -GCaGaGGUCUu-UGUGGUG-CGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 88911 0.66 0.881244
Target:  5'- gCGUCgggcgagCGGAAGCGCC-CGCGGCg-- -3'
miRNA:   3'- -GCAGag-----GUCUUUGUGGuGCGCCGgga -5'
29449 3' -56.9 NC_006151.1 + 89705 0.66 0.881244
Target:  5'- gCGUCcaggaacCCGGcgGCGCCGgcCGCGGCCg- -3'
miRNA:   3'- -GCAGa------GGUCuuUGUGGU--GCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 102401 0.66 0.881244
Target:  5'- gGUCg-CGGcgcGCGUCGCGCGGCCCg -3'
miRNA:   3'- gCAGagGUCuu-UGUGGUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 118462 0.66 0.881244
Target:  5'- uGg--CCGcGGACGCgCACGCGGCCUa -3'
miRNA:   3'- gCagaGGUcUUUGUG-GUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 68025 0.66 0.866794
Target:  5'- ---gUCCAGGu---CCAgGCGGCCCg -3'
miRNA:   3'- gcagAGGUCUuuguGGUgCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 134746 0.66 0.866794
Target:  5'- uGUCgccCCgAGcAGCGCgCGCGgGGCCCg -3'
miRNA:   3'- gCAGa--GG-UCuUUGUG-GUGCgCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 141406 0.66 0.851508
Target:  5'- gCGUgUCCGGcGAUcgguGCgGgCGCGGCCCg -3'
miRNA:   3'- -GCAgAGGUCuUUG----UGgU-GCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 10308 0.66 0.859253
Target:  5'- gCGUCcCCGGcguCAUCACGCGGgaCCCc -3'
miRNA:   3'- -GCAGaGGUCuuuGUGGUGCGCC--GGGa -5'
29449 3' -56.9 NC_006151.1 + 24404 0.66 0.859253
Target:  5'- gCGUCUCgAaGAGCACCACcccCGcGCCCc -3'
miRNA:   3'- -GCAGAGgUcUUUGUGGUGc--GC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 112402 0.66 0.859253
Target:  5'- gGcCUCCGGGAuCGCCGCGCGcagaucgaccGCCg- -3'
miRNA:   3'- gCaGAGGUCUUuGUGGUGCGC----------CGGga -5'
29449 3' -56.9 NC_006151.1 + 37523 0.66 0.859253
Target:  5'- --aCUCgaGGAAGCAgCACGaGGCCCUc -3'
miRNA:   3'- gcaGAGg-UCUUUGUgGUGCgCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 66747 0.66 0.859253
Target:  5'- gCGgcgCUCCuuccGcGACGCCGCGaCGGCCg- -3'
miRNA:   3'- -GCa--GAGGu---CuUUGUGGUGC-GCCGGga -5'
29449 3' -56.9 NC_006151.1 + 100502 0.66 0.859253
Target:  5'- cCGUgUUCCGGAcGCugugcgccgACCACGCGcGCCUg -3'
miRNA:   3'- -GCA-GAGGUCUuUG---------UGGUGCGC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 13990 0.66 0.866794
Target:  5'- gCGUC-CCcGggGC-CCACGUgugaGGCCCc -3'
miRNA:   3'- -GCAGaGGuCuuUGuGGUGCG----CCGGGa -5'
29449 3' -56.9 NC_006151.1 + 64606 0.66 0.866794
Target:  5'- gGUacgCCAGcgGCGCCGCGCcgccGGCCg- -3'
miRNA:   3'- gCAga-GGUCuuUGUGGUGCG----CCGGga -5'
29449 3' -56.9 NC_006151.1 + 137103 0.66 0.866794
Target:  5'- gGUgCUggCCGGGGACGCCugGgGGCgCg -3'
miRNA:   3'- gCA-GA--GGUCUUUGUGGugCgCCGgGa -5'
29449 3' -56.9 NC_006151.1 + 34008 0.66 0.866794
Target:  5'- gCGUC-CCGGc-GCGCCgGCcCGGCCCUc -3'
miRNA:   3'- -GCAGaGGUCuuUGUGG-UGcGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 38558 0.66 0.866794
Target:  5'- gCGgcgCaagaAGAAGCGCCGCGCgcccggGGCCCg -3'
miRNA:   3'- -GCagaGg---UCUUUGUGGUGCG------CCGGGa -5'
29449 3' -56.9 NC_006151.1 + 61519 0.66 0.866794
Target:  5'- gGUCUgCGGGuuCGcCCugGCcGCCCUg -3'
miRNA:   3'- gCAGAgGUCUuuGU-GGugCGcCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.