miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 3' -56.9 NC_006151.1 + 96459 0.66 0.866794
Target:  5'- ---gUCCAGGucCGCCuCGCGGCuCCg -3'
miRNA:   3'- gcagAGGUCUuuGUGGuGCGCCG-GGa -5'
29449 3' -56.9 NC_006151.1 + 113893 0.66 0.866794
Target:  5'- uCGUCggCCGcGcgGCGCaagacgcugacgCGCGCGGCCCg -3'
miRNA:   3'- -GCAGa-GGU-CuuUGUG------------GUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 10308 0.66 0.859253
Target:  5'- gCGUCcCCGGcguCAUCACGCGGgaCCCc -3'
miRNA:   3'- -GCAGaGGUCuuuGUGGUGCGCC--GGGa -5'
29449 3' -56.9 NC_006151.1 + 24404 0.66 0.859253
Target:  5'- gCGUCUCgAaGAGCACCACcccCGcGCCCc -3'
miRNA:   3'- -GCAGAGgUcUUUGUGGUGc--GC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 112402 0.66 0.859253
Target:  5'- gGcCUCCGGGAuCGCCGCGCGcagaucgaccGCCg- -3'
miRNA:   3'- gCaGAGGUCUUuGUGGUGCGC----------CGGga -5'
29449 3' -56.9 NC_006151.1 + 37523 0.66 0.859253
Target:  5'- --aCUCgaGGAAGCAgCACGaGGCCCUc -3'
miRNA:   3'- gcaGAGg-UCUUUGUgGUGCgCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 66747 0.66 0.859253
Target:  5'- gCGgcgCUCCuuccGcGACGCCGCGaCGGCCg- -3'
miRNA:   3'- -GCa--GAGGu---CuUUGUGGUGC-GCCGGga -5'
29449 3' -56.9 NC_006151.1 + 100502 0.66 0.859253
Target:  5'- cCGUgUUCCGGAcGCugugcgccgACCACGCGcGCCUg -3'
miRNA:   3'- -GCA-GAGGUCUuUG---------UGGUGCGC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 62375 0.66 0.851508
Target:  5'- uCGUCaUCgGGAcGCGcgccguCCugGCGGUCCUg -3'
miRNA:   3'- -GCAG-AGgUCUuUGU------GGugCGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 141406 0.66 0.851508
Target:  5'- gCGUgUCCGGcGAUcgguGCgGgCGCGGCCCg -3'
miRNA:   3'- -GCAgAGGUCuUUG----UGgU-GCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 38509 0.66 0.843566
Target:  5'- --cCUCCGGcuACGCCAgcucccccgcCGcCGGCCCg -3'
miRNA:   3'- gcaGAGGUCuuUGUGGU----------GC-GCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 130449 0.66 0.843566
Target:  5'- gCGgcgCCAGAAACAUgGCGUGGUgCa -3'
miRNA:   3'- -GCagaGGUCUUUGUGgUGCGCCGgGa -5'
29449 3' -56.9 NC_006151.1 + 117246 0.66 0.843566
Target:  5'- aCGUCggcgggCCcGAGGCGCgggccgCGCGCGGCCg- -3'
miRNA:   3'- -GCAGa-----GGuCUUUGUG------GUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 58555 0.66 0.843566
Target:  5'- uCGUCUCCucuu-CGCCGcCGCcGCCCg -3'
miRNA:   3'- -GCAGAGGucuuuGUGGU-GCGcCGGGa -5'
29449 3' -56.9 NC_006151.1 + 50978 0.66 0.843566
Target:  5'- gGUCUCUcuuuccGCGCaCGCGCGGCCg- -3'
miRNA:   3'- gCAGAGGucuu--UGUG-GUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 87582 0.66 0.842761
Target:  5'- aCGUCUCCGccGGcaccaucGACGCCAgcucggccgcCGUGGCCUg -3'
miRNA:   3'- -GCAGAGGU--CU-------UUGUGGU----------GCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 135349 0.67 0.835434
Target:  5'- aCGUgUCCGcGAGcCGCCGCGCguuGGCCg- -3'
miRNA:   3'- -GCAgAGGU-CUUuGUGGUGCG---CCGGga -5'
29449 3' -56.9 NC_006151.1 + 109795 0.67 0.835434
Target:  5'- -cUCccgCCGGAGuuuGCGCCGC-CGGCCCc -3'
miRNA:   3'- gcAGa--GGUCUU---UGUGGUGcGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 83226 0.67 0.835434
Target:  5'- gGUCUggUC-GAAGCGCgGCGCGcGCCCc -3'
miRNA:   3'- gCAGA--GGuCUUUGUGgUGCGC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 5381 0.67 0.835434
Target:  5'- uGUCUCUgcGGggGCGCCcCGCcGUCCc -3'
miRNA:   3'- gCAGAGG--UCuuUGUGGuGCGcCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.