miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 127390 0.67 0.529231
Target:  5'- gGCGGGGgccgcggccgagUCGACGGGagCCCGcGGGGuCg -3'
miRNA:   3'- -CGUCCC------------GGCUGUCUagGGGC-CCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 17279 0.67 0.533009
Target:  5'- gGC-GGGCUGAuacggaggggcucccCGGGcuucgagccgUCCgCCGGGGGGCg -3'
miRNA:   3'- -CGuCCCGGCU---------------GUCU----------AGG-GGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 64851 0.67 0.537745
Target:  5'- gGCgAGGGCCucGGCGGAgggccgcUgCCCGGcGGGAg -3'
miRNA:   3'- -CG-UCCCGG--CUGUCU-------AgGGGCC-CCCUg -5'
29449 5' -62.9 NC_006151.1 + 121912 0.67 0.557786
Target:  5'- cGCGcGGGCCGAgGGGgaCCgCGugcuGGGGGCg -3'
miRNA:   3'- -CGU-CCCGGCUgUCUa-GGgGC----CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 54615 0.67 0.557786
Target:  5'- cGguGcGCCGGgcGcgCCCCGGGGGGa -3'
miRNA:   3'- -CguCcCGGCUguCuaGGGGCCCCCUg -5'
29449 5' -62.9 NC_006151.1 + 18057 0.67 0.557786
Target:  5'- aGCGGGGagCG--GGGUCCCUuGGGGGCc -3'
miRNA:   3'- -CGUCCCg-GCugUCUAGGGGcCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 13421 0.67 0.557786
Target:  5'- aGCcGGGCCcGC--GUCCCCGGGGcccGCa -3'
miRNA:   3'- -CGuCCCGGcUGucUAGGGGCCCCc--UG- -5'
29449 5' -62.9 NC_006151.1 + 1978 0.67 0.556826
Target:  5'- -aGGGGCCGgagagucagaGCAGAgUCCggccgggCCGaGGGGGCg -3'
miRNA:   3'- cgUCCCGGC----------UGUCU-AGG-------GGC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 35317 0.67 0.548214
Target:  5'- -aGGGGCCaaGAUGGcgCCCuCGGGgccGGACa -3'
miRNA:   3'- cgUCCCGG--CUGUCuaGGG-GCCC---CCUG- -5'
29449 5' -62.9 NC_006151.1 + 3834 0.67 0.548214
Target:  5'- gGCGGGGCUGG-AGggCCcggagCCGGGGaGGCc -3'
miRNA:   3'- -CGUCCCGGCUgUCuaGG-----GGCCCC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 1803 0.67 0.548214
Target:  5'- --cGGGCCGgggagGCAGG-CgCCGGGGaGGCa -3'
miRNA:   3'- cguCCCGGC-----UGUCUaGgGGCCCC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 33918 0.67 0.547259
Target:  5'- cGCGuccGGCgGGCGGAUcgaggcccgcgcgCCCCGGGGGc- -3'
miRNA:   3'- -CGUc--CCGgCUGUCUA-------------GGGGCCCCCug -5'
29449 5' -62.9 NC_006151.1 + 23879 0.67 0.538694
Target:  5'- gGCGGGGgCGAgCGGGUUCaCGGGcuGGGCg -3'
miRNA:   3'- -CGUCCCgGCU-GUCUAGGgGCCC--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 28582 0.68 0.473902
Target:  5'- cGCAuuGGCCGGCGcGUCCCCGGaGGcGGg -3'
miRNA:   3'- -CGUc-CCGGCUGUcUAGGGGCC-CC-CUg -5'
29449 5' -62.9 NC_006151.1 + 3139 0.68 0.482025
Target:  5'- cGCGGGGCgcccuCGGCGGGcucggcgcagagcUCCUCGuGGGGCa -3'
miRNA:   3'- -CGUCCCG-----GCUGUCU-------------AGGGGCcCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 57033 0.68 0.482931
Target:  5'- cCAGGGCa---GGAUCagCGGGGGGCg -3'
miRNA:   3'- cGUCCCGgcugUCUAGggGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 45615 0.68 0.486566
Target:  5'- aCGGGGCgGGCGGAagggggcguggacgCCCCGGGcgaaGACa -3'
miRNA:   3'- cGUCCCGgCUGUCUa-------------GGGGCCCc---CUG- -5'
29449 5' -62.9 NC_006151.1 + 42267 0.68 0.491127
Target:  5'- aGCGGGGg-GugGGAUcgcgagccucucgCCCCGGGGGuCg -3'
miRNA:   3'- -CGUCCCggCugUCUA-------------GGGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 37862 0.68 0.492042
Target:  5'- --cGGGCCGcgccGCGGAcCCCCGcgccGGGGAg -3'
miRNA:   3'- cguCCCGGC----UGUCUaGGGGC----CCCCUg -5'
29449 5' -62.9 NC_006151.1 + 21083 0.68 0.473902
Target:  5'- uCAGGGCgGcgaGGAggagCCCCGcGGGGAg -3'
miRNA:   3'- cGUCCCGgCug-UCUa---GGGGC-CCCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.