Results 61 - 80 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29449 | 5' | -62.9 | NC_006151.1 | + | 90725 | 0.68 | 0.473902 |
Target: 5'- gGCGGcGGCgacgguggCGGCGGcgCCCUcGGGGGCg -3' miRNA: 3'- -CGUC-CCG--------GCUGUCuaGGGGcCCCCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 23429 | 0.68 | 0.473902 |
Target: 5'- cGUGGGGgCGAUGGGUgggaggguggCCCCGGGGcGGg -3' miRNA: 3'- -CGUCCCgGCUGUCUA----------GGGGCCCC-CUg -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 21083 | 0.68 | 0.473902 |
Target: 5'- uCAGGGCgGcgaGGAggagCCCCGcGGGGAg -3' miRNA: 3'- cGUCCCGgCug-UCUa---GGGGC-CCCCUg -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 131077 | 0.68 | 0.501231 |
Target: 5'- cGgAGGGCgcgCGACAGGuagUCCacgucggCGGGGGGCc -3' miRNA: 3'- -CgUCCCG---GCUGUCU---AGGg------GCCCCCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 37862 | 0.68 | 0.492042 |
Target: 5'- --cGGGCCGcgccGCGGAcCCCCGcgccGGGGAg -3' miRNA: 3'- cguCCCGGC----UGUCUaGGGGC----CCCCUg -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 42267 | 0.68 | 0.491127 |
Target: 5'- aGCGGGGg-GugGGAUcgcgagccucucgCCCCGGGGGuCg -3' miRNA: 3'- -CGUCCCggCugUCUA-------------GGGGCCCCCuG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 45615 | 0.68 | 0.486566 |
Target: 5'- aCGGGGCgGGCGGAagggggcguggacgCCCCGGGcgaaGACa -3' miRNA: 3'- cGUCCCGgCUGUCUa-------------GGGGCCCc---CUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 57033 | 0.68 | 0.482931 |
Target: 5'- cCAGGGCa---GGAUCagCGGGGGGCg -3' miRNA: 3'- cGUCCCGgcugUCUAGggGCCCCCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 3139 | 0.68 | 0.482025 |
Target: 5'- cGCGGGGCgcccuCGGCGGGcucggcgcagagcUCCUCGuGGGGCa -3' miRNA: 3'- -CGUCCCG-----GCUGUCU-------------AGGGGCcCCCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 28582 | 0.68 | 0.473902 |
Target: 5'- cGCAuuGGCCGGCGcGUCCCCGGaGGcGGg -3' miRNA: 3'- -CGUc-CCGGCUGUcUAGGGGCC-CC-CUg -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 2367 | 0.69 | 0.419107 |
Target: 5'- cGCAGaaggcgcgcaacucGGCCGGCAGGcCCUCGGGGccGCg -3' miRNA: 3'- -CGUC--------------CCGGCUGUCUaGGGGCCCCc-UG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 141643 | 0.69 | 0.421629 |
Target: 5'- cGCGGcGGCgCGGCGGggCCCCGcGGG-Cu -3' miRNA: 3'- -CGUC-CCG-GCUGUCuaGGGGCcCCCuG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 133285 | 0.69 | 0.421629 |
Target: 5'- gGCGGcGGCCcACGucGAgguucUCCCCGGGGG-Cg -3' miRNA: 3'- -CGUC-CCGGcUGU--CU-----AGGGGCCCCCuG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 41656 | 0.69 | 0.427549 |
Target: 5'- -aGGGGCCGGCgcgauaugcagaugAGAUCCgUGGGGaccGGCg -3' miRNA: 3'- cgUCCCGGCUG--------------UCUAGGgGCCCC---CUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 41719 | 0.69 | 0.427549 |
Target: 5'- -aGGGGCCGGCgcgauaugcagaugAGAUCCgUGGGGaccGGCg -3' miRNA: 3'- cgUCCCGGCUG--------------UCUAGGgGCCCC---CUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 113110 | 0.69 | 0.430101 |
Target: 5'- gGCGGGGCCGcggacGCGGAcgCCgCCGGGcccGGCu -3' miRNA: 3'- -CGUCCCGGC-----UGUCUa-GG-GGCCCc--CUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 8117 | 0.69 | 0.438673 |
Target: 5'- -gGGGGUCGgagcGCGGA-CCCCgcccggugGGGGGGCg -3' miRNA: 3'- cgUCCCGGC----UGUCUaGGGG--------CCCCCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 64756 | 0.69 | 0.438673 |
Target: 5'- aGCGGGGCCaccgugcgcgggGGCuGGUUgCCGGGGcGCg -3' miRNA: 3'- -CGUCCCGG------------CUGuCUAGgGGCCCCcUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 5762 | 0.7 | 0.380822 |
Target: 5'- cCGGGcucaCCGAcCGGGUCCCCccucgcGGGGGACc -3' miRNA: 3'- cGUCCc---GGCU-GUCUAGGGG------CCCCCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 9692 | 0.7 | 0.372983 |
Target: 5'- cGCccGGCCG-CGGGUgCCCGGGaGACg -3' miRNA: 3'- -CGucCCGGCuGUCUAgGGGCCCcCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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