miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 64756 0.69 0.438673
Target:  5'- aGCGGGGCCaccgugcgcgggGGCuGGUUgCCGGGGcGCg -3'
miRNA:   3'- -CGUCCCGG------------CUGuCUAGgGGCCCCcUG- -5'
29449 5' -62.9 NC_006151.1 + 8117 0.69 0.438673
Target:  5'- -gGGGGUCGgagcGCGGA-CCCCgcccggugGGGGGGCg -3'
miRNA:   3'- cgUCCCGGC----UGUCUaGGGG--------CCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 5009 0.68 0.447342
Target:  5'- cGCgGGGGCCgGGCGGG-CUCCGGGgccgGGGCc -3'
miRNA:   3'- -CG-UCCCGG-CUGUCUaGGGGCCC----CCUG- -5'
29449 5' -62.9 NC_006151.1 + 61831 0.68 0.447342
Target:  5'- cGCGGcGUCGACGGuggccgCCCCG-GGGACc -3'
miRNA:   3'- -CGUCcCGGCUGUCua----GGGGCcCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 4521 0.68 0.447342
Target:  5'- gGCAGGGCCcagaGCGGGUCCUgGGcGGccauGGCg -3'
miRNA:   3'- -CGUCCCGGc---UGUCUAGGGgCC-CC----CUG- -5'
29449 5' -62.9 NC_006151.1 + 20126 0.68 0.456105
Target:  5'- aCGGGGCUGGgGGGcgggCgCCGcGGGGGCg -3'
miRNA:   3'- cGUCCCGGCUgUCUa---GgGGC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 22204 0.68 0.464959
Target:  5'- cGCGGGGCCGACgaAGGg---CGaGGGGACc -3'
miRNA:   3'- -CGUCCCGGCUG--UCUagggGC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 30788 0.68 0.464959
Target:  5'- uCAGGguguuccaGCCGAUGG--CCCCGGGGGcACg -3'
miRNA:   3'- cGUCC--------CGGCUGUCuaGGGGCCCCC-UG- -5'
29449 5' -62.9 NC_006151.1 + 29404 0.68 0.46585
Target:  5'- gGCGGGaCCGcGCGGAgaaggcucgguguggCCgCGGGGGGCg -3'
miRNA:   3'- -CGUCCcGGC-UGUCUa--------------GGgGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 28582 0.68 0.473902
Target:  5'- cGCAuuGGCCGGCGcGUCCCCGGaGGcGGg -3'
miRNA:   3'- -CGUc-CCGGCUGUcUAGGGGCC-CC-CUg -5'
29449 5' -62.9 NC_006151.1 + 21083 0.68 0.473902
Target:  5'- uCAGGGCgGcgaGGAggagCCCCGcGGGGAg -3'
miRNA:   3'- cGUCCCGgCug-UCUa---GGGGC-CCCCUg -5'
29449 5' -62.9 NC_006151.1 + 23429 0.68 0.473902
Target:  5'- cGUGGGGgCGAUGGGUgggaggguggCCCCGGGGcGGg -3'
miRNA:   3'- -CGUCCCgGCUGUCUA----------GGGGCCCC-CUg -5'
29449 5' -62.9 NC_006151.1 + 90725 0.68 0.473902
Target:  5'- gGCGGcGGCgacgguggCGGCGGcgCCCUcGGGGGCg -3'
miRNA:   3'- -CGUC-CCG--------GCUGUCuaGGGGcCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 3139 0.68 0.482025
Target:  5'- cGCGGGGCgcccuCGGCGGGcucggcgcagagcUCCUCGuGGGGCa -3'
miRNA:   3'- -CGUCCCG-----GCUGUCU-------------AGGGGCcCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 57033 0.68 0.482931
Target:  5'- cCAGGGCa---GGAUCagCGGGGGGCg -3'
miRNA:   3'- cGUCCCGgcugUCUAGggGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 45615 0.68 0.486566
Target:  5'- aCGGGGCgGGCGGAagggggcguggacgCCCCGGGcgaaGACa -3'
miRNA:   3'- cGUCCCGgCUGUCUa-------------GGGGCCCc---CUG- -5'
29449 5' -62.9 NC_006151.1 + 42267 0.68 0.491127
Target:  5'- aGCGGGGg-GugGGAUcgcgagccucucgCCCCGGGGGuCg -3'
miRNA:   3'- -CGUCCCggCugUCUA-------------GGGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 37862 0.68 0.492042
Target:  5'- --cGGGCCGcgccGCGGAcCCCCGcgccGGGGAg -3'
miRNA:   3'- cguCCCGGC----UGUCUaGGGGC----CCCCUg -5'
29449 5' -62.9 NC_006151.1 + 131077 0.68 0.501231
Target:  5'- cGgAGGGCgcgCGACAGGuagUCCacgucggCGGGGGGCc -3'
miRNA:   3'- -CgUCCCG---GCUGUCU---AGGg------GCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 5817 0.67 0.510495
Target:  5'- -aGGGGCCGGgAGAgCCggaggaggaggCCGGGGaGGCu -3'
miRNA:   3'- cgUCCCGGCUgUCUaGG-----------GGCCCC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.