Results 61 - 80 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29449 | 5' | -62.9 | NC_006151.1 | + | 5817 | 0.67 | 0.510495 |
Target: 5'- -aGGGGCCGGgAGAgCCggaggaggaggCCGGGGaGGCu -3' miRNA: 3'- cgUCCCGGCUgUCUaGG-----------GGCCCC-CUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 137916 | 0.67 | 0.518894 |
Target: 5'- gGCGGcGGCUGccACGGGcgccugcUCCCCuuuGGGGACg -3' miRNA: 3'- -CGUC-CCGGC--UGUCU-------AGGGGc--CCCCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 102117 | 0.67 | 0.51983 |
Target: 5'- uGCGcGGGCCGGagccuguUCCCCGGGcgcgccGGGCu -3' miRNA: 3'- -CGU-CCCGGCUgucu---AGGGGCCC------CCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 127390 | 0.67 | 0.529231 |
Target: 5'- gGCGGGGgccgcggccgagUCGACGGGagCCCGcGGGGuCg -3' miRNA: 3'- -CGUCCC------------GGCUGUCUagGGGC-CCCCuG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 103827 | 0.67 | 0.529231 |
Target: 5'- gGCGGcGGCCGugGaGAUgCUCGGGcGGCu -3' miRNA: 3'- -CGUC-CCGGCugU-CUAgGGGCCCcCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 38584 | 0.67 | 0.529231 |
Target: 5'- cCGGGGCCcGCcg--CCCCGGGGacGGCg -3' miRNA: 3'- cGUCCCGGcUGucuaGGGGCCCC--CUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 31935 | 0.67 | 0.529231 |
Target: 5'- --cGGGaCCGGgGGGUCCCgCGugaugacgccGGGGACg -3' miRNA: 3'- cguCCC-GGCUgUCUAGGG-GC----------CCCCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 4370 | 0.67 | 0.529231 |
Target: 5'- -gAGGGCCucGACGGucgccUCCCCGGcgcGGGGg -3' miRNA: 3'- cgUCCCGG--CUGUCu----AGGGGCC---CCCUg -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 135137 | 0.67 | 0.529231 |
Target: 5'- gGCGGGGaCgGGCAGAcccagCCCGGcGGGCg -3' miRNA: 3'- -CGUCCC-GgCUGUCUag---GGGCCcCCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 66789 | 0.67 | 0.529231 |
Target: 5'- gGCGGcGGCggCGGCGGGg-CCCGGGGacGACg -3' miRNA: 3'- -CGUC-CCG--GCUGUCUagGGGCCCC--CUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 17279 | 0.67 | 0.533009 |
Target: 5'- gGC-GGGCUGAuacggaggggcucccCGGGcuucgagccgUCCgCCGGGGGGCg -3' miRNA: 3'- -CGuCCCGGCU---------------GUCU----------AGG-GGCCCCCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 64851 | 0.67 | 0.537745 |
Target: 5'- gGCgAGGGCCucGGCGGAgggccgcUgCCCGGcGGGAg -3' miRNA: 3'- -CG-UCCCGG--CUGUCU-------AgGGGCC-CCCUg -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 23879 | 0.67 | 0.538694 |
Target: 5'- gGCGGGGgCGAgCGGGUUCaCGGGcuGGGCg -3' miRNA: 3'- -CGUCCCgGCU-GUCUAGGgGCCC--CCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 33918 | 0.67 | 0.547259 |
Target: 5'- cGCGuccGGCgGGCGGAUcgaggcccgcgcgCCCCGGGGGc- -3' miRNA: 3'- -CGUc--CCGgCUGUCUA-------------GGGGCCCCCug -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 3834 | 0.67 | 0.548214 |
Target: 5'- gGCGGGGCUGG-AGggCCcggagCCGGGGaGGCc -3' miRNA: 3'- -CGUCCCGGCUgUCuaGG-----GGCCCC-CUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 35317 | 0.67 | 0.548214 |
Target: 5'- -aGGGGCCaaGAUGGcgCCCuCGGGgccGGACa -3' miRNA: 3'- cgUCCCGG--CUGUCuaGGG-GCCC---CCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 1803 | 0.67 | 0.548214 |
Target: 5'- --cGGGCCGgggagGCAGG-CgCCGGGGaGGCa -3' miRNA: 3'- cguCCCGGC-----UGUCUaGgGGCCCC-CUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 1978 | 0.67 | 0.556826 |
Target: 5'- -aGGGGCCGgagagucagaGCAGAgUCCggccgggCCGaGGGGGCg -3' miRNA: 3'- cgUCCCGGC----------UGUCU-AGG-------GGC-CCCCUG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 13421 | 0.67 | 0.557786 |
Target: 5'- aGCcGGGCCcGC--GUCCCCGGGGcccGCa -3' miRNA: 3'- -CGuCCCGGcUGucUAGGGGCCCCc--UG- -5' |
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29449 | 5' | -62.9 | NC_006151.1 | + | 18057 | 0.67 | 0.557786 |
Target: 5'- aGCGGGGagCG--GGGUCCCUuGGGGGCc -3' miRNA: 3'- -CGUCCCg-GCugUCUAGGGGcCCCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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