miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 22798 0.66 0.615029
Target:  5'- uGCuGGGCCGuC---UCCCCGgccgucaggugcaGGGGGCg -3'
miRNA:   3'- -CGuCCCGGCuGucuAGGGGC-------------CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 23429 0.68 0.473902
Target:  5'- cGUGGGGgCGAUGGGUgggaggguggCCCCGGGGcGGg -3'
miRNA:   3'- -CGUCCCgGCUGUCUA----------GGGGCCCC-CUg -5'
29449 5' -62.9 NC_006151.1 + 23879 0.67 0.538694
Target:  5'- gGCGGGGgCGAgCGGGUUCaCGGGcuGGGCg -3'
miRNA:   3'- -CGUCCCgGCU-GUCUAGGgGCCC--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 27195 0.66 0.593567
Target:  5'- -gGGGGCCGcGCAGAaggCgCCGGGgccccgcgcgccguGGACg -3'
miRNA:   3'- cgUCCCGGC-UGUCUa--GgGGCCC--------------CCUG- -5'
29449 5' -62.9 NC_006151.1 + 28237 0.7 0.380822
Target:  5'- gGCcGGGCCGACGGG-CCCauuGGccGGGGCc -3'
miRNA:   3'- -CGuCCCGGCUGUCUaGGGg--CC--CCCUG- -5'
29449 5' -62.9 NC_006151.1 + 28308 0.71 0.314304
Target:  5'- ---uGGCCGGCGcGUCCCCGGGGcGCc -3'
miRNA:   3'- cgucCCGGCUGUcUAGGGGCCCCcUG- -5'
29449 5' -62.9 NC_006151.1 + 28582 0.68 0.473902
Target:  5'- cGCAuuGGCCGGCGcGUCCCCGGaGGcGGg -3'
miRNA:   3'- -CGUc-CCGGCUGUcUAGGGGCC-CC-CUg -5'
29449 5' -62.9 NC_006151.1 + 29234 0.73 0.251143
Target:  5'- cGCcGGGUCGGCcGcgCCCCGaGGGACa -3'
miRNA:   3'- -CGuCCCGGCUGuCuaGGGGCcCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 29404 0.68 0.46585
Target:  5'- gGCGGGaCCGcGCGGAgaaggcucgguguggCCgCGGGGGGCg -3'
miRNA:   3'- -CGUCCcGGC-UGUCUa--------------GGgGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 30788 0.68 0.464959
Target:  5'- uCAGGguguuccaGCCGAUGG--CCCCGGGGGcACg -3'
miRNA:   3'- cGUCC--------CGGCUGUCuaGGGGCCCCC-UG- -5'
29449 5' -62.9 NC_006151.1 + 31935 0.67 0.529231
Target:  5'- --cGGGaCCGGgGGGUCCCgCGugaugacgccGGGGACg -3'
miRNA:   3'- cguCCC-GGCUgUCUAGGG-GC----------CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 32845 0.72 0.265282
Target:  5'- aGgGGGGCCGGCGGGgauggggaagaaggCCCgacccgcgCGGGGGGCc -3'
miRNA:   3'- -CgUCCCGGCUGUCUa-------------GGG--------GCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 33223 0.67 0.510495
Target:  5'- cGCGGGGCgcccCGGCGGG-CgggagggggUCCGGGGGAa -3'
miRNA:   3'- -CGUCCCG----GCUGUCUaG---------GGGCCCCCUg -5'
29449 5' -62.9 NC_006151.1 + 33274 0.66 0.566441
Target:  5'- gGCGGcGGCCaucgcccGACccuUCCCCGGGGcGCg -3'
miRNA:   3'- -CGUC-CCGG-------CUGucuAGGGGCCCCcUG- -5'
29449 5' -62.9 NC_006151.1 + 33918 0.67 0.547259
Target:  5'- cGCGuccGGCgGGCGGAUcgaggcccgcgcgCCCCGGGGGc- -3'
miRNA:   3'- -CGUc--CCGgCUGUCUA-------------GGGGCCCCCug -5'
29449 5' -62.9 NC_006151.1 + 33959 0.7 0.372983
Target:  5'- uCGGGGCgGgacGCGGcgCCCgCGcGGGGACa -3'
miRNA:   3'- cGUCCCGgC---UGUCuaGGG-GC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 35317 0.67 0.548214
Target:  5'- -aGGGGCCaaGAUGGcgCCCuCGGGgccGGACa -3'
miRNA:   3'- cgUCCCGG--CUGUCuaGGG-GCCC---CCUG- -5'
29449 5' -62.9 NC_006151.1 + 37862 0.68 0.492042
Target:  5'- --cGGGCCGcgccGCGGAcCCCCGcgccGGGGAg -3'
miRNA:   3'- cguCCCGGC----UGUCUaGGGGC----CCCCUg -5'
29449 5' -62.9 NC_006151.1 + 38584 0.67 0.529231
Target:  5'- cCGGGGCCcGCcg--CCCCGGGGacGGCg -3'
miRNA:   3'- cGUCCCGGcUGucuaGGGGCCCC--CUG- -5'
29449 5' -62.9 NC_006151.1 + 40091 0.66 0.616007
Target:  5'- cCGGGGCCGG-----CCCCGGcGaGGACg -3'
miRNA:   3'- cGUCCCGGCUgucuaGGGGCC-C-CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.