miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 41656 0.69 0.427549
Target:  5'- -aGGGGCCGGCgcgauaugcagaugAGAUCCgUGGGGaccGGCg -3'
miRNA:   3'- cgUCCCGGCUG--------------UCUAGGgGCCCC---CUG- -5'
29449 5' -62.9 NC_006151.1 + 41719 0.69 0.427549
Target:  5'- -aGGGGCCGGCgcgauaugcagaugAGAUCCgUGGGGaccGGCg -3'
miRNA:   3'- cgUCCCGGCUG--------------UCUAGGgGCCCC---CUG- -5'
29449 5' -62.9 NC_006151.1 + 42267 0.68 0.491127
Target:  5'- aGCGGGGg-GugGGAUcgcgagccucucgCCCCGGGGGuCg -3'
miRNA:   3'- -CGUCCCggCugUCUA-------------GGGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 44374 0.66 0.567405
Target:  5'- -gAGGGUugCGACGG-UCCcgCCGcGGGGGCg -3'
miRNA:   3'- cgUCCCG--GCUGUCuAGG--GGC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 45459 0.74 0.213436
Target:  5'- cGCGGGGCggCGACGGA-CCCaggggugagagCGGGGGAUc -3'
miRNA:   3'- -CGUCCCG--GCUGUCUaGGG-----------GCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 45615 0.68 0.486566
Target:  5'- aCGGGGCgGGCGGAagggggcguggacgCCCCGGGcgaaGACa -3'
miRNA:   3'- cGUCCCGgCUGUCUa-------------GGGGCCCc---CUG- -5'
29449 5' -62.9 NC_006151.1 + 54615 0.67 0.557786
Target:  5'- cGguGcGCCGGgcGcgCCCCGGGGGGa -3'
miRNA:   3'- -CguCcCGGCUguCuaGGGGCCCCCUg -5'
29449 5' -62.9 NC_006151.1 + 55434 0.7 0.360671
Target:  5'- gGCGGGcGCgGACGGGaccggcgccgccggCCCCgccGGGGGGCg -3'
miRNA:   3'- -CGUCC-CGgCUGUCUa-------------GGGG---CCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 57033 0.68 0.482931
Target:  5'- cCAGGGCa---GGAUCagCGGGGGGCg -3'
miRNA:   3'- cGUCCCGgcugUCUAGggGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 60407 0.72 0.300106
Target:  5'- -gAGGGCgCGcACGGcccagcggcccacGUCCUCGGGGGGCc -3'
miRNA:   3'- cgUCCCG-GC-UGUC-------------UAGGGGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 61831 0.68 0.447342
Target:  5'- cGCGGcGUCGACGGuggccgCCCCG-GGGACc -3'
miRNA:   3'- -CGUCcCGGCUGUCua----GGGGCcCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 63789 0.66 0.600386
Target:  5'- gGCGGGGUCGGCcgucgccagcgccucGccGggCCCCGGGGcGCc -3'
miRNA:   3'- -CGUCCCGGCUG---------------U--CuaGGGGCCCCcUG- -5'
29449 5' -62.9 NC_006151.1 + 64756 0.69 0.438673
Target:  5'- aGCGGGGCCaccgugcgcgggGGCuGGUUgCCGGGGcGCg -3'
miRNA:   3'- -CGUCCCGG------------CUGuCUAGgGGCCCCcUG- -5'
29449 5' -62.9 NC_006151.1 + 64851 0.67 0.537745
Target:  5'- gGCgAGGGCCucGGCGGAgggccgcUgCCCGGcGGGAg -3'
miRNA:   3'- -CG-UCCCGG--CUGUCU-------AgGGGCC-CCCUg -5'
29449 5' -62.9 NC_006151.1 + 66789 0.67 0.529231
Target:  5'- gGCGGcGGCggCGGCGGGg-CCCGGGGacGACg -3'
miRNA:   3'- -CGUC-CCG--GCUGUCUagGGGCCCC--CUG- -5'
29449 5' -62.9 NC_006151.1 + 72439 1.1 0.000529
Target:  5'- uGCAGGGCCGACAGAUCCCCGGGGGACa -3'
miRNA:   3'- -CGUCCCGGCUGUCUAGGGGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 74561 0.7 0.350132
Target:  5'- -uGGGGCUGguugcccaGCGGGUCCCCGGGcaGCg -3'
miRNA:   3'- cgUCCCGGC--------UGUCUAGGGGCCCccUG- -5'
29449 5' -62.9 NC_006151.1 + 76788 0.71 0.342739
Target:  5'- cGCAgucGGcGCCGuACAGcgCCCCGGcGaGGGCg -3'
miRNA:   3'- -CGU---CC-CGGC-UGUCuaGGGGCC-C-CCUG- -5'
29449 5' -62.9 NC_006151.1 + 78309 0.66 0.606239
Target:  5'- -gAGGGCaugcuCGACAGGcuggacgagcgCCCCGGGgcGGGCg -3'
miRNA:   3'- cgUCCCG-----GCUGUCUa----------GGGGCCC--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 78701 0.66 0.616007
Target:  5'- cCGGGGCCucgucgccgcGACGGcgCCCgUGGGGcGCg -3'
miRNA:   3'- cGUCCCGG----------CUGUCuaGGG-GCCCCcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.