miRNA display CGI


Results 81 - 100 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 79295 0.66 0.586762
Target:  5'- -gAGGagagucccgcGCCccggGACGGGccUCCCCGGcGGGACg -3'
miRNA:   3'- cgUCC----------CGG----CUGUCU--AGGGGCC-CCCUG- -5'
29449 5' -62.9 NC_006151.1 + 81261 0.71 0.314304
Target:  5'- gGCAGGGCgaGCAGcgCCUCGGcGGGGa -3'
miRNA:   3'- -CGUCCCGgcUGUCuaGGGGCC-CCCUg -5'
29449 5' -62.9 NC_006151.1 + 82145 0.66 0.616007
Target:  5'- gGCGGGcCCGGCggcuccAGGUCCgagccgagcgCCGGGGGcGCg -3'
miRNA:   3'- -CGUCCcGGCUG------UCUAGG----------GGCCCCC-UG- -5'
29449 5' -62.9 NC_006151.1 + 83323 0.72 0.296799
Target:  5'- cGCAGGGCCGugaGCAGGcgcgcguccacgugcUCCCCGGcgcgcgcgcGGGCg -3'
miRNA:   3'- -CGUCCCGGC---UGUCU---------------AGGGGCCc--------CCUG- -5'
29449 5' -62.9 NC_006151.1 + 83407 0.66 0.577065
Target:  5'- aGCGaGGCCaccacCAGGUugCCgCCGGGGGGCu -3'
miRNA:   3'- -CGUcCCGGcu---GUCUA--GG-GGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 90666 0.7 0.364488
Target:  5'- cGCGGGG-CGGCGGGccgcuugUCCCCcgcggcGGGGGCg -3'
miRNA:   3'- -CGUCCCgGCUGUCU-------AGGGGc-----CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 90725 0.68 0.473902
Target:  5'- gGCGGcGGCgacgguggCGGCGGcgCCCUcGGGGGCg -3'
miRNA:   3'- -CGUC-CCG--------GCUGUCuaGGGGcCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 96657 0.66 0.586762
Target:  5'- gGCgAGGGCCcgGGCGacGUCCUCGGGGcaGGCg -3'
miRNA:   3'- -CG-UCCCGG--CUGUc-UAGGGGCCCC--CUG- -5'
29449 5' -62.9 NC_006151.1 + 98014 0.75 0.180695
Target:  5'- gGCGGcGCCGGcCAGGUCCgCGGGGuGGCg -3'
miRNA:   3'- -CGUCcCGGCU-GUCUAGGgGCCCC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 101212 0.72 0.262284
Target:  5'- cGCgAGGGCCaggcgugGACGGggCCCgGcGGGGGCa -3'
miRNA:   3'- -CG-UCCCGG-------CUGUCuaGGGgC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 102117 0.67 0.51983
Target:  5'- uGCGcGGGCCGGagccuguUCCCCGGGcgcgccGGGCu -3'
miRNA:   3'- -CGU-CCCGGCUgucu---AGGGGCCC------CCUG- -5'
29449 5' -62.9 NC_006151.1 + 103827 0.67 0.529231
Target:  5'- gGCGGcGGCCGugGaGAUgCUCGGGcGGCu -3'
miRNA:   3'- -CGUC-CCGGCugU-CUAgGGGCCCcCUG- -5'
29449 5' -62.9 NC_006151.1 + 110687 0.66 0.586762
Target:  5'- cGCGGcGGUgGGgAGAUCggggaaagaCCGGGGGAa -3'
miRNA:   3'- -CGUC-CCGgCUgUCUAGg--------GGCCCCCUg -5'
29449 5' -62.9 NC_006151.1 + 112072 0.74 0.208464
Target:  5'- gGUGGGGCUGGUGGAgcUCCCCGGGucGGGCg -3'
miRNA:   3'- -CGUCCCGGCUGUCU--AGGGGCCC--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 113110 0.69 0.430101
Target:  5'- gGCGGGGCCGcggacGCGGAcgCCgCCGGGcccGGCu -3'
miRNA:   3'- -CGUCCCGGC-----UGUCUa-GG-GGCCCc--CUG- -5'
29449 5' -62.9 NC_006151.1 + 121430 0.66 0.606239
Target:  5'- cGCGGGGCuCGcgccggccucGCuGGUgCCCgcggagcuGGGGGGCa -3'
miRNA:   3'- -CGUCCCG-GC----------UGuCUAgGGG--------CCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 121912 0.67 0.557786
Target:  5'- cGCGcGGGCCGAgGGGgaCCgCGugcuGGGGGCg -3'
miRNA:   3'- -CGU-CCCGGCUgUCUa-GGgGC----CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 122937 0.73 0.245437
Target:  5'- cGCGGacGCCGACGGcggcgCCgCGGGGGGCg -3'
miRNA:   3'- -CGUCc-CGGCUGUCua---GGgGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 127390 0.67 0.529231
Target:  5'- gGCGGGGgccgcggccgagUCGACGGGagCCCGcGGGGuCg -3'
miRNA:   3'- -CGUCCC------------GGCUGUCUagGGGC-CCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 129180 0.79 0.098416
Target:  5'- cGCAGGGCCGccacggccgccgucaGCAccUCCCCGGGGGcCg -3'
miRNA:   3'- -CGUCCCGGC---------------UGUcuAGGGGCCCCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.