miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 103827 0.67 0.529231
Target:  5'- gGCGGcGGCCGugGaGAUgCUCGGGcGGCu -3'
miRNA:   3'- -CGUC-CCGGCugU-CUAgGGGCCCcCUG- -5'
29449 5' -62.9 NC_006151.1 + 102117 0.67 0.51983
Target:  5'- uGCGcGGGCCGGagccuguUCCCCGGGcgcgccGGGCu -3'
miRNA:   3'- -CGU-CCCGGCUgucu---AGGGGCCC------CCUG- -5'
29449 5' -62.9 NC_006151.1 + 101212 0.72 0.262284
Target:  5'- cGCgAGGGCCaggcgugGACGGggCCCgGcGGGGGCa -3'
miRNA:   3'- -CG-UCCCGG-------CUGUCuaGGGgC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 98014 0.75 0.180695
Target:  5'- gGCGGcGCCGGcCAGGUCCgCGGGGuGGCg -3'
miRNA:   3'- -CGUCcCGGCU-GUCUAGGgGCCCC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 96657 0.66 0.586762
Target:  5'- gGCgAGGGCCcgGGCGacGUCCUCGGGGcaGGCg -3'
miRNA:   3'- -CG-UCCCGG--CUGUc-UAGGGGCCCC--CUG- -5'
29449 5' -62.9 NC_006151.1 + 90725 0.68 0.473902
Target:  5'- gGCGGcGGCgacgguggCGGCGGcgCCCUcGGGGGCg -3'
miRNA:   3'- -CGUC-CCG--------GCUGUCuaGGGGcCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 90666 0.7 0.364488
Target:  5'- cGCGGGG-CGGCGGGccgcuugUCCCCcgcggcGGGGGCg -3'
miRNA:   3'- -CGUCCCgGCUGUCU-------AGGGGc-----CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 83407 0.66 0.577065
Target:  5'- aGCGaGGCCaccacCAGGUugCCgCCGGGGGGCu -3'
miRNA:   3'- -CGUcCCGGcu---GUCUA--GG-GGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 83323 0.72 0.296799
Target:  5'- cGCAGGGCCGugaGCAGGcgcgcguccacgugcUCCCCGGcgcgcgcgcGGGCg -3'
miRNA:   3'- -CGUCCCGGC---UGUCU---------------AGGGGCCc--------CCUG- -5'
29449 5' -62.9 NC_006151.1 + 82145 0.66 0.616007
Target:  5'- gGCGGGcCCGGCggcuccAGGUCCgagccgagcgCCGGGGGcGCg -3'
miRNA:   3'- -CGUCCcGGCUG------UCUAGG----------GGCCCCC-UG- -5'
29449 5' -62.9 NC_006151.1 + 81261 0.71 0.314304
Target:  5'- gGCAGGGCgaGCAGcgCCUCGGcGGGGa -3'
miRNA:   3'- -CGUCCCGgcUGUCuaGGGGCC-CCCUg -5'
29449 5' -62.9 NC_006151.1 + 79295 0.66 0.586762
Target:  5'- -gAGGagagucccgcGCCccggGACGGGccUCCCCGGcGGGACg -3'
miRNA:   3'- cgUCC----------CGG----CUGUCU--AGGGGCC-CCCUG- -5'
29449 5' -62.9 NC_006151.1 + 78701 0.66 0.616007
Target:  5'- cCGGGGCCucgucgccgcGACGGcgCCCgUGGGGcGCg -3'
miRNA:   3'- cGUCCCGG----------CUGUCuaGGG-GCCCCcUG- -5'
29449 5' -62.9 NC_006151.1 + 78309 0.66 0.606239
Target:  5'- -gAGGGCaugcuCGACAGGcuggacgagcgCCCCGGGgcGGGCg -3'
miRNA:   3'- cgUCCCG-----GCUGUCUa----------GGGGCCC--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 76788 0.71 0.342739
Target:  5'- cGCAgucGGcGCCGuACAGcgCCCCGGcGaGGGCg -3'
miRNA:   3'- -CGU---CC-CGGC-UGUCuaGGGGCC-C-CCUG- -5'
29449 5' -62.9 NC_006151.1 + 74561 0.7 0.350132
Target:  5'- -uGGGGCUGguugcccaGCGGGUCCCCGGGcaGCg -3'
miRNA:   3'- cgUCCCGGC--------UGUCUAGGGGCCCccUG- -5'
29449 5' -62.9 NC_006151.1 + 72439 1.1 0.000529
Target:  5'- uGCAGGGCCGACAGAUCCCCGGGGGACa -3'
miRNA:   3'- -CGUCCCGGCUGUCUAGGGGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 66789 0.67 0.529231
Target:  5'- gGCGGcGGCggCGGCGGGg-CCCGGGGacGACg -3'
miRNA:   3'- -CGUC-CCG--GCUGUCUagGGGCCCC--CUG- -5'
29449 5' -62.9 NC_006151.1 + 64851 0.67 0.537745
Target:  5'- gGCgAGGGCCucGGCGGAgggccgcUgCCCGGcGGGAg -3'
miRNA:   3'- -CG-UCCCGG--CUGUCU-------AgGGGCC-CCCUg -5'
29449 5' -62.9 NC_006151.1 + 64756 0.69 0.438673
Target:  5'- aGCGGGGCCaccgugcgcgggGGCuGGUUgCCGGGGcGCg -3'
miRNA:   3'- -CGUCCCGG------------CUGuCUAGgGGCCCCcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.