miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 32845 0.72 0.265282
Target:  5'- aGgGGGGCCGGCGGGgauggggaagaaggCCCgacccgcgCGGGGGGCc -3'
miRNA:   3'- -CgUCCCGGCUGUCUa-------------GGG--------GCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 31935 0.67 0.529231
Target:  5'- --cGGGaCCGGgGGGUCCCgCGugaugacgccGGGGACg -3'
miRNA:   3'- cguCCC-GGCUgUCUAGGG-GC----------CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 30788 0.68 0.464959
Target:  5'- uCAGGguguuccaGCCGAUGG--CCCCGGGGGcACg -3'
miRNA:   3'- cGUCC--------CGGCUGUCuaGGGGCCCCC-UG- -5'
29449 5' -62.9 NC_006151.1 + 29404 0.68 0.46585
Target:  5'- gGCGGGaCCGcGCGGAgaaggcucgguguggCCgCGGGGGGCg -3'
miRNA:   3'- -CGUCCcGGC-UGUCUa--------------GGgGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 29234 0.73 0.251143
Target:  5'- cGCcGGGUCGGCcGcgCCCCGaGGGACa -3'
miRNA:   3'- -CGuCCCGGCUGuCuaGGGGCcCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 28582 0.68 0.473902
Target:  5'- cGCAuuGGCCGGCGcGUCCCCGGaGGcGGg -3'
miRNA:   3'- -CGUc-CCGGCUGUcUAGGGGCC-CC-CUg -5'
29449 5' -62.9 NC_006151.1 + 28308 0.71 0.314304
Target:  5'- ---uGGCCGGCGcGUCCCCGGGGcGCc -3'
miRNA:   3'- cgucCCGGCUGUcUAGGGGCCCCcUG- -5'
29449 5' -62.9 NC_006151.1 + 28237 0.7 0.380822
Target:  5'- gGCcGGGCCGACGGG-CCCauuGGccGGGGCc -3'
miRNA:   3'- -CGuCCCGGCUGUCUaGGGg--CC--CCCUG- -5'
29449 5' -62.9 NC_006151.1 + 27195 0.66 0.593567
Target:  5'- -gGGGGCCGcGCAGAaggCgCCGGGgccccgcgcgccguGGACg -3'
miRNA:   3'- cgUCCCGGC-UGUCUa--GgGGCCC--------------CCUG- -5'
29449 5' -62.9 NC_006151.1 + 23879 0.67 0.538694
Target:  5'- gGCGGGGgCGAgCGGGUUCaCGGGcuGGGCg -3'
miRNA:   3'- -CGUCCCgGCU-GUCUAGGgGCCC--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 23429 0.68 0.473902
Target:  5'- cGUGGGGgCGAUGGGUgggaggguggCCCCGGGGcGGg -3'
miRNA:   3'- -CGUCCCgGCUGUCUA----------GGGGCCCC-CUg -5'
29449 5' -62.9 NC_006151.1 + 22798 0.66 0.615029
Target:  5'- uGCuGGGCCGuC---UCCCCGgccgucaggugcaGGGGGCg -3'
miRNA:   3'- -CGuCCCGGCuGucuAGGGGC-------------CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 22204 0.68 0.464959
Target:  5'- cGCGGGGCCGACgaAGGg---CGaGGGGACc -3'
miRNA:   3'- -CGUCCCGGCUG--UCUagggGC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 21399 0.66 0.567405
Target:  5'- gGCGGGGCgaaggggcggugCGGCGucucGggCCUCGGGGGuCg -3'
miRNA:   3'- -CGUCCCG------------GCUGU----CuaGGGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 21083 0.68 0.473902
Target:  5'- uCAGGGCgGcgaGGAggagCCCCGcGGGGAg -3'
miRNA:   3'- cGUCCCGgCug-UCUa---GGGGC-CCCCUg -5'
29449 5' -62.9 NC_006151.1 + 20451 0.77 0.141314
Target:  5'- aGCGGGGCUcggggguGGCGccGGUCCCCcgGGGGGGCg -3'
miRNA:   3'- -CGUCCCGG-------CUGU--CUAGGGG--CCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 20126 0.68 0.456105
Target:  5'- aCGGGGCUGGgGGGcgggCgCCGcGGGGGCg -3'
miRNA:   3'- cGUCCCGGCUgUCUa---GgGGC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 19092 0.66 0.605263
Target:  5'- uGCAGGGCuCGuacacguaguacaGCAGGcaCCgCGGGGGcGCg -3'
miRNA:   3'- -CGUCCCG-GC-------------UGUCUa-GGgGCCCCC-UG- -5'
29449 5' -62.9 NC_006151.1 + 18057 0.67 0.557786
Target:  5'- aGCGGGGagCG--GGGUCCCUuGGGGGCc -3'
miRNA:   3'- -CGUCCCg-GCugUCUAGGGGcCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 17420 0.66 0.596488
Target:  5'- aGCAGGGCCaGC-GAg--CCGGGGG-Cg -3'
miRNA:   3'- -CGUCCCGGcUGuCUaggGGCCCCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.