miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 1746 0.66 0.616007
Target:  5'- cGCAGccaccuccGGCCGGgGGAUCCgCGcGGaGGAg -3'
miRNA:   3'- -CGUC--------CCGGCUgUCUAGGgGC-CC-CCUg -5'
29449 5' -62.9 NC_006151.1 + 2174 0.66 0.616007
Target:  5'- cCGGGGCCGGCcccggcgcccgAGGcCCCCGcGGGcCg -3'
miRNA:   3'- cGUCCCGGCUG-----------UCUaGGGGCcCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 5978 0.66 0.616007
Target:  5'- uGCucGGaGCCuGAUGGAgagCCcgaCCGGGGGACc -3'
miRNA:   3'- -CGu-CC-CGG-CUGUCUa--GG---GGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 40091 0.66 0.616007
Target:  5'- cCGGGGCCGG-----CCCCGGcGaGGACg -3'
miRNA:   3'- cGUCCCGGCUgucuaGGGGCC-C-CCUG- -5'
29449 5' -62.9 NC_006151.1 + 78701 0.66 0.616007
Target:  5'- cCGGGGCCucgucgccgcGACGGcgCCCgUGGGGcGCg -3'
miRNA:   3'- cGUCCCGG----------CUGUCuaGGG-GCCCCcUG- -5'
29449 5' -62.9 NC_006151.1 + 63789 0.66 0.600386
Target:  5'- gGCGGGGUCGGCcgucgccagcgccucGccGggCCCCGGGGcGCc -3'
miRNA:   3'- -CGUCCCGGCUG---------------U--CuaGGGGCCCCcUG- -5'
29449 5' -62.9 NC_006151.1 + 17163 0.66 0.600386
Target:  5'- cGCAGaGGUCGGCGGcgCCCaGGauccacagguggaucGGGGCc -3'
miRNA:   3'- -CGUC-CCGGCUGUCuaGGGgCC---------------CCCUG- -5'
29449 5' -62.9 NC_006151.1 + 2115 0.66 0.567405
Target:  5'- cGCGGGGCCGGCc-GUCgCCGccgcGGACg -3'
miRNA:   3'- -CGUCCCGGCUGucUAGgGGCcc--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 21399 0.66 0.567405
Target:  5'- gGCGGGGCgaaggggcggugCGGCGucucGggCCUCGGGGGuCg -3'
miRNA:   3'- -CGUCCCG------------GCUGU----CuaGGGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 44374 0.66 0.567405
Target:  5'- -gAGGGUugCGACGG-UCCcgCCGcGGGGGCg -3'
miRNA:   3'- cgUCCCG--GCUGUCuAGG--GGC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 13943 0.66 0.577065
Target:  5'- -gGGGGCgGGCg---CCCCG-GGGACg -3'
miRNA:   3'- cgUCCCGgCUGucuaGGGGCcCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 83407 0.66 0.577065
Target:  5'- aGCGaGGCCaccacCAGGUugCCgCCGGGGGGCu -3'
miRNA:   3'- -CGUcCCGGcu---GUCUA--GG-GGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 3679 0.66 0.577065
Target:  5'- cCGGGG-CGGCGGG-CCCCGGGcGcGCg -3'
miRNA:   3'- cGUCCCgGCUGUCUaGGGGCCC-CcUG- -5'
29449 5' -62.9 NC_006151.1 + 79295 0.66 0.586762
Target:  5'- -gAGGagagucccgcGCCccggGACGGGccUCCCCGGcGGGACg -3'
miRNA:   3'- cgUCC----------CGG----CUGUCU--AGGGGCC-CCCUG- -5'
29449 5' -62.9 NC_006151.1 + 96657 0.66 0.586762
Target:  5'- gGCgAGGGCCcgGGCGacGUCCUCGGGGcaGGCg -3'
miRNA:   3'- -CG-UCCCGG--CUGUc-UAGGGGCCCC--CUG- -5'
29449 5' -62.9 NC_006151.1 + 110687 0.66 0.586762
Target:  5'- cGCGGcGGUgGGgAGAUCggggaaagaCCGGGGGAa -3'
miRNA:   3'- -CGUC-CCGgCUgUCUAGg--------GGCCCCCUg -5'
29449 5' -62.9 NC_006151.1 + 13980 0.66 0.586762
Target:  5'- aGCcGGGCCcGC--GUCCCCGGGGcccACg -3'
miRNA:   3'- -CGuCCCGGcUGucUAGGGGCCCCc--UG- -5'
29449 5' -62.9 NC_006151.1 + 27195 0.66 0.593567
Target:  5'- -gGGGGCCGcGCAGAaggCgCCGGGgccccgcgcgccguGGACg -3'
miRNA:   3'- cgUCCCGGC-UGUCUa--GgGGCCC--------------CCUG- -5'
29449 5' -62.9 NC_006151.1 + 17420 0.66 0.596488
Target:  5'- aGCAGGGCCaGC-GAg--CCGGGGG-Cg -3'
miRNA:   3'- -CGUCCCGGcUGuCUaggGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 11032 0.66 0.596488
Target:  5'- cGCcGGGCCGGCcggccGGGggCCCGGccuGGACg -3'
miRNA:   3'- -CGuCCCGGCUG-----UCUagGGGCCc--CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.