miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 96657 0.66 0.586762
Target:  5'- gGCgAGGGCCcgGGCGacGUCCUCGGGGcaGGCg -3'
miRNA:   3'- -CG-UCCCGG--CUGUc-UAGGGGCCCC--CUG- -5'
29449 5' -62.9 NC_006151.1 + 110687 0.66 0.586762
Target:  5'- cGCGGcGGUgGGgAGAUCggggaaagaCCGGGGGAa -3'
miRNA:   3'- -CGUC-CCGgCUgUCUAGg--------GGCCCCCUg -5'
29449 5' -62.9 NC_006151.1 + 13980 0.66 0.586762
Target:  5'- aGCcGGGCCcGC--GUCCCCGGGGcccACg -3'
miRNA:   3'- -CGuCCCGGcUGucUAGGGGCCCCc--UG- -5'
29449 5' -62.9 NC_006151.1 + 3679 0.66 0.577065
Target:  5'- cCGGGG-CGGCGGG-CCCCGGGcGcGCg -3'
miRNA:   3'- cGUCCCgGCUGUCUaGGGGCCC-CcUG- -5'
29449 5' -62.9 NC_006151.1 + 83407 0.66 0.577065
Target:  5'- aGCGaGGCCaccacCAGGUugCCgCCGGGGGGCu -3'
miRNA:   3'- -CGUcCCGGcu---GUCUA--GG-GGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 13943 0.66 0.577065
Target:  5'- -gGGGGCgGGCg---CCCCG-GGGACg -3'
miRNA:   3'- cgUCCCGgCUGucuaGGGGCcCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 2115 0.66 0.567405
Target:  5'- cGCGGGGCCGGCc-GUCgCCGccgcGGACg -3'
miRNA:   3'- -CGUCCCGGCUGucUAGgGGCcc--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 21399 0.66 0.567405
Target:  5'- gGCGGGGCgaaggggcggugCGGCGucucGggCCUCGGGGGuCg -3'
miRNA:   3'- -CGUCCCG------------GCUGU----CuaGGGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 44374 0.66 0.567405
Target:  5'- -gAGGGUugCGACGG-UCCcgCCGcGGGGGCg -3'
miRNA:   3'- cgUCCCG--GCUGUCuAGG--GGC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 33274 0.66 0.566441
Target:  5'- gGCGGcGGCCaucgcccGACccuUCCCCGGGGcGCg -3'
miRNA:   3'- -CGUC-CCGG-------CUGucuAGGGGCCCCcUG- -5'
29449 5' -62.9 NC_006151.1 + 13421 0.67 0.557786
Target:  5'- aGCcGGGCCcGC--GUCCCCGGGGcccGCa -3'
miRNA:   3'- -CGuCCCGGcUGucUAGGGGCCCCc--UG- -5'
29449 5' -62.9 NC_006151.1 + 18057 0.67 0.557786
Target:  5'- aGCGGGGagCG--GGGUCCCUuGGGGGCc -3'
miRNA:   3'- -CGUCCCg-GCugUCUAGGGGcCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 54615 0.67 0.557786
Target:  5'- cGguGcGCCGGgcGcgCCCCGGGGGGa -3'
miRNA:   3'- -CguCcCGGCUguCuaGGGGCCCCCUg -5'
29449 5' -62.9 NC_006151.1 + 121912 0.67 0.557786
Target:  5'- cGCGcGGGCCGAgGGGgaCCgCGugcuGGGGGCg -3'
miRNA:   3'- -CGU-CCCGGCUgUCUa-GGgGC----CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 1978 0.67 0.556826
Target:  5'- -aGGGGCCGgagagucagaGCAGAgUCCggccgggCCGaGGGGGCg -3'
miRNA:   3'- cgUCCCGGC----------UGUCU-AGG-------GGC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 35317 0.67 0.548214
Target:  5'- -aGGGGCCaaGAUGGcgCCCuCGGGgccGGACa -3'
miRNA:   3'- cgUCCCGG--CUGUCuaGGG-GCCC---CCUG- -5'
29449 5' -62.9 NC_006151.1 + 3834 0.67 0.548214
Target:  5'- gGCGGGGCUGG-AGggCCcggagCCGGGGaGGCc -3'
miRNA:   3'- -CGUCCCGGCUgUCuaGG-----GGCCCC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 1803 0.67 0.548214
Target:  5'- --cGGGCCGgggagGCAGG-CgCCGGGGaGGCa -3'
miRNA:   3'- cguCCCGGC-----UGUCUaGgGGCCCC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 33918 0.67 0.547259
Target:  5'- cGCGuccGGCgGGCGGAUcgaggcccgcgcgCCCCGGGGGc- -3'
miRNA:   3'- -CGUc--CCGgCUGUCUA-------------GGGGCCCCCug -5'
29449 5' -62.9 NC_006151.1 + 23879 0.67 0.538694
Target:  5'- gGCGGGGgCGAgCGGGUUCaCGGGcuGGGCg -3'
miRNA:   3'- -CGUCCCgGCU-GUCUAGGgGCCC--CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.