miRNA display CGI


Results 1 - 20 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29450 3' -63.7 NC_006151.1 + 99713 0.66 0.604112
Target:  5'- --cCCAUgGaGGCGCCGaCGaGCGCGGc -3'
miRNA:   3'- gauGGUGgUgCCGCGGC-GCcCGCGCC- -5'
29450 3' -63.7 NC_006151.1 + 2801 0.66 0.604112
Target:  5'- -gGCCAgCgCACGGCGCacUGGGCGgcCGGg -3'
miRNA:   3'- gaUGGU-G-GUGCCGCGgcGCCCGC--GCC- -5'
29450 3' -63.7 NC_006151.1 + 57724 0.66 0.604112
Target:  5'- -gGCUugACCGCGcGCGcCCGCacGGCGCGc -3'
miRNA:   3'- gaUGG--UGGUGC-CGC-GGCGc-CCGCGCc -5'
29450 3' -63.7 NC_006151.1 + 68362 0.66 0.604112
Target:  5'- -aGCCGCCA-GGCGgcaaaguccuCCGUcaGGGCcGCGGc -3'
miRNA:   3'- gaUGGUGGUgCCGC----------GGCG--CCCG-CGCC- -5'
29450 3' -63.7 NC_006151.1 + 75205 0.66 0.604112
Target:  5'- -aGCCcgACgAgGGCGUCG-GGGCGCGc -3'
miRNA:   3'- gaUGG--UGgUgCCGCGGCgCCCGCGCc -5'
29450 3' -63.7 NC_006151.1 + 40157 0.66 0.604112
Target:  5'- -gGCC-CCGCGGC-CCGCucGGGCccaucaagGUGGa -3'
miRNA:   3'- gaUGGuGGUGCCGcGGCG--CCCG--------CGCC- -5'
29450 3' -63.7 NC_006151.1 + 81272 0.66 0.604112
Target:  5'- -cAgCGCCuCGGCGgggaUCuCGGGCGCGGc -3'
miRNA:   3'- gaUgGUGGuGCCGC----GGcGCCCGCGCC- -5'
29450 3' -63.7 NC_006151.1 + 83859 0.66 0.604112
Target:  5'- aUGCgCAUCcCGGCGCgCuucCGGGCGgGGa -3'
miRNA:   3'- gAUG-GUGGuGCCGCG-Gc--GCCCGCgCC- -5'
29450 3' -63.7 NC_006151.1 + 84763 0.66 0.604112
Target:  5'- -cGCCGCCGaggaGGCGgaCGCGG-CGCGn -3'
miRNA:   3'- gaUGGUGGUg---CCGCg-GCGCCcGCGCc -5'
29450 3' -63.7 NC_006151.1 + 91558 0.66 0.604112
Target:  5'- -gGCCAgCGgGGCGaUgGCGGcGCGCGc -3'
miRNA:   3'- gaUGGUgGUgCCGC-GgCGCC-CGCGCc -5'
29450 3' -63.7 NC_006151.1 + 125526 0.66 0.604112
Target:  5'- -gGCCAucUCGCGGUG-CGUGGagguGCGCGGc -3'
miRNA:   3'- gaUGGU--GGUGCCGCgGCGCC----CGCGCC- -5'
29450 3' -63.7 NC_006151.1 + 130111 0.66 0.604112
Target:  5'- -gGCCgugaaGCC-CGGguucugGCCGUGGGCGCGc -3'
miRNA:   3'- gaUGG-----UGGuGCCg-----CGGCGCCCGCGCc -5'
29450 3' -63.7 NC_006151.1 + 130298 0.66 0.604112
Target:  5'- -cGCCgGCCgACGGCGCggaGCGcGCGCGc -3'
miRNA:   3'- gaUGG-UGG-UGCCGCGg--CGCcCGCGCc -5'
29450 3' -63.7 NC_006151.1 + 140058 0.66 0.604112
Target:  5'- -cGCCACCGaGGCGgCGCGcGUGCu- -3'
miRNA:   3'- gaUGGUGGUgCCGCgGCGCcCGCGcc -5'
29450 3' -63.7 NC_006151.1 + 65028 0.66 0.603149
Target:  5'- --cCCACCucguACGGCagggggcccggcgGCgGCGGGCGCc- -3'
miRNA:   3'- gauGGUGG----UGCCG-------------CGgCGCCCGCGcc -5'
29450 3' -63.7 NC_006151.1 + 99959 0.66 0.598339
Target:  5'- gCUACCgcACCAagcucgccgcgcucgUGGCGgCGCuGGCGCGc -3'
miRNA:   3'- -GAUGG--UGGU---------------GCCGCgGCGcCCGCGCc -5'
29450 3' -63.7 NC_006151.1 + 109611 0.66 0.594496
Target:  5'- -cGCCGCCGuCGGaccCGCCGguccaguucccCGGGCGagaGGa -3'
miRNA:   3'- gaUGGUGGU-GCC---GCGGC-----------GCCCGCg--CC- -5'
29450 3' -63.7 NC_006151.1 + 81187 0.66 0.594496
Target:  5'- -cGCCGCCGagcguguacgcCGG-GCCGCaguccGGGCGcCGGc -3'
miRNA:   3'- gaUGGUGGU-----------GCCgCGGCG-----CCCGC-GCC- -5'
29450 3' -63.7 NC_006151.1 + 51960 0.66 0.594496
Target:  5'- -cACCACgCGCGGCGUguccaGCGaGGCgagcagcuccGCGGu -3'
miRNA:   3'- gaUGGUG-GUGCCGCGg----CGC-CCG----------CGCC- -5'
29450 3' -63.7 NC_006151.1 + 19006 0.66 0.594496
Target:  5'- -cGCCACCAgcCGcGCGCgCGCcGGCGaGGu -3'
miRNA:   3'- gaUGGUGGU--GC-CGCG-GCGcCCGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.