miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29451 3' -58 NC_006151.1 + 96970 0.66 0.815261
Target:  5'- gUCaCACaCGACGCggacgCGGCAcggaGGGUCAGCGg -3'
miRNA:   3'- gAG-GUG-GUUGUG-----GCCGU----UCCGGUCGU- -5'
29451 3' -58 NC_006151.1 + 53473 0.66 0.815261
Target:  5'- --gCGCgAACGCCGGCAGcGaGCCguGGCAc -3'
miRNA:   3'- gagGUGgUUGUGGCCGUU-C-CGG--UCGU- -5'
29451 3' -58 NC_006151.1 + 130367 0.66 0.815261
Target:  5'- -aCgGCCGcgcGCGCCgcGGCGuccagcgcgaAGGCCAGCGc -3'
miRNA:   3'- gaGgUGGU---UGUGG--CCGU----------UCCGGUCGU- -5'
29451 3' -58 NC_006151.1 + 34125 0.66 0.815261
Target:  5'- -cCCGCCccccCACCgGGCGGGGUCcGCGc -3'
miRNA:   3'- gaGGUGGuu--GUGG-CCGUUCCGGuCGU- -5'
29451 3' -58 NC_006151.1 + 21534 0.66 0.815261
Target:  5'- uUCgGCCGGgGCCGGggcCGGGGCCugGGCc -3'
miRNA:   3'- gAGgUGGUUgUGGCC---GUUCCGG--UCGu -5'
29451 3' -58 NC_006151.1 + 133783 0.66 0.815261
Target:  5'- -gCCGCCc-CGCgGGgGAGGCguGCAg -3'
miRNA:   3'- gaGGUGGuuGUGgCCgUUCCGguCGU- -5'
29451 3' -58 NC_006151.1 + 69021 0.66 0.815261
Target:  5'- gCUCCAgCAGCACCagcuccgcgguGGCGucaaAGaCCGGCAg -3'
miRNA:   3'- -GAGGUgGUUGUGG-----------CCGU----UCcGGUCGU- -5'
29451 3' -58 NC_006151.1 + 59598 0.66 0.806488
Target:  5'- gUCgGCCAcCACgGGCAcGGCCccggaGGCGu -3'
miRNA:   3'- gAGgUGGUuGUGgCCGUuCCGG-----UCGU- -5'
29451 3' -58 NC_006151.1 + 64055 0.66 0.806488
Target:  5'- gUCCAgcgaggccCCGACcauGCCGGUGcgcGGGuCCAGCAg -3'
miRNA:   3'- gAGGU--------GGUUG---UGGCCGU---UCC-GGUCGU- -5'
29451 3' -58 NC_006151.1 + 67556 0.66 0.806488
Target:  5'- -aCCACCAcgugGCGCCcGCGGGcGuCCAGCc -3'
miRNA:   3'- gaGGUGGU----UGUGGcCGUUC-C-GGUCGu -5'
29451 3' -58 NC_006151.1 + 67884 0.66 0.806488
Target:  5'- --gCGCCAGC-CC-GCGGGGCaCAGCGc -3'
miRNA:   3'- gagGUGGUUGuGGcCGUUCCG-GUCGU- -5'
29451 3' -58 NC_006151.1 + 136049 0.66 0.806488
Target:  5'- gUgCGCCcgcGCACCGGCAAcGCCgAGUAc -3'
miRNA:   3'- gAgGUGGu--UGUGGCCGUUcCGG-UCGU- -5'
29451 3' -58 NC_006151.1 + 132098 0.66 0.805602
Target:  5'- cCUCCucgaugagGCCGGCGCgcacgagCGGCAGGcCCAGCu -3'
miRNA:   3'- -GAGG--------UGGUUGUG-------GCCGUUCcGGUCGu -5'
29451 3' -58 NC_006151.1 + 125711 0.66 0.803825
Target:  5'- cCUgCACCGGCaaccACCGGCGcuacuuuaagcuggGGGCgGGUAc -3'
miRNA:   3'- -GAgGUGGUUG----UGGCCGU--------------UCCGgUCGU- -5'
29451 3' -58 NC_006151.1 + 3953 0.66 0.797557
Target:  5'- gCUCCGCgGGCccggGCCGcGCGGcGGCCucGGCGa -3'
miRNA:   3'- -GAGGUGgUUG----UGGC-CGUU-CCGG--UCGU- -5'
29451 3' -58 NC_006151.1 + 46280 0.66 0.797557
Target:  5'- -aCCGCCAGCGCgUGacCGAGGCCAuGCu -3'
miRNA:   3'- gaGGUGGUUGUG-GCc-GUUCCGGU-CGu -5'
29451 3' -58 NC_006151.1 + 107240 0.66 0.797557
Target:  5'- cCUCCAUCAuCAUgGGCGAcGCCcGCGu -3'
miRNA:   3'- -GAGGUGGUuGUGgCCGUUcCGGuCGU- -5'
29451 3' -58 NC_006151.1 + 130634 0.66 0.797557
Target:  5'- -cUCACgAGCGCCGcCGAGGCCGccuGCGg -3'
miRNA:   3'- gaGGUGgUUGUGGCcGUUCCGGU---CGU- -5'
29451 3' -58 NC_006151.1 + 123071 0.66 0.797557
Target:  5'- --aCGCCgAGCGCCGGCGGcGCCuGUAc -3'
miRNA:   3'- gagGUGG-UUGUGGCCGUUcCGGuCGU- -5'
29451 3' -58 NC_006151.1 + 135082 0.66 0.797557
Target:  5'- cCUCgGgCGGgGgCGGCGGGGCCgGGCGg -3'
miRNA:   3'- -GAGgUgGUUgUgGCCGUUCCGG-UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.