miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29451 3' -58 NC_006151.1 + 70398 1.08 0.001783
Target:  5'- cCUCCACCAACACCGGCAAGGCCAGCAc -3'
miRNA:   3'- -GAGGUGGUUGUGGCCGUUCCGGUCGU- -5'
29451 3' -58 NC_006151.1 + 72258 0.83 0.101593
Target:  5'- -gCCGCCGACGCCGaGCGgcguGGCCAGCAu -3'
miRNA:   3'- gaGGUGGUUGUGGC-CGUu---CCGGUCGU- -5'
29451 3' -58 NC_006151.1 + 61035 0.8 0.142627
Target:  5'- uCUgCACCAGCAgCCGGCGguaGGGCCGGCc -3'
miRNA:   3'- -GAgGUGGUUGU-GGCCGU---UCCGGUCGu -5'
29451 3' -58 NC_006151.1 + 3883 0.79 0.179407
Target:  5'- -gCCGCCGGCGCCGGCGcugggacgacgAGGCCGGg- -3'
miRNA:   3'- gaGGUGGUUGUGGCCGU-----------UCCGGUCgu -5'
29451 3' -58 NC_006151.1 + 68650 0.77 0.235568
Target:  5'- gCUCCACUGccACgGCCGGCGGGGCCcGCGu -3'
miRNA:   3'- -GAGGUGGU--UG-UGGCCGUUCCGGuCGU- -5'
29451 3' -58 NC_006151.1 + 38376 0.77 0.235568
Target:  5'- gUCCcagcGCCGGCGCCGGCGGcGGCgGGCGc -3'
miRNA:   3'- gAGG----UGGUUGUGGCCGUU-CCGgUCGU- -5'
29451 3' -58 NC_006151.1 + 54540 0.76 0.272024
Target:  5'- uCUCgGCCAGCGaguccaaCGGCAcGGCCAGCu -3'
miRNA:   3'- -GAGgUGGUUGUg------GCCGUuCCGGUCGu -5'
29451 3' -58 NC_006151.1 + 65495 0.76 0.281158
Target:  5'- -gCCGCgGACGCCGGCGgagcgcgccuccuccGcGGCCAGCAg -3'
miRNA:   3'- gaGGUGgUUGUGGCCGU---------------U-CCGGUCGU- -5'
29451 3' -58 NC_006151.1 + 21959 0.75 0.291892
Target:  5'- gUCCACC-ACAUCGGCGuggugcGGcGCCGGCAg -3'
miRNA:   3'- gAGGUGGuUGUGGCCGU------UC-CGGUCGU- -5'
29451 3' -58 NC_006151.1 + 65078 0.75 0.298763
Target:  5'- gUCCAUCAGCACCcGCGuGGGCCGGUc -3'
miRNA:   3'- gAGGUGGUUGUGGcCGU-UCCGGUCGu -5'
29451 3' -58 NC_006151.1 + 58646 0.75 0.312877
Target:  5'- ---gGCCAGCGCCGGgAGGGCgCGGCGc -3'
miRNA:   3'- gaggUGGUUGUGGCCgUUCCG-GUCGU- -5'
29451 3' -58 NC_006151.1 + 5025 0.75 0.312877
Target:  5'- gCUCCgggGCCGGgGCCGGgGAGGCCgcGGCGg -3'
miRNA:   3'- -GAGG---UGGUUgUGGCCgUUCCGG--UCGU- -5'
29451 3' -58 NC_006151.1 + 100093 0.75 0.31576
Target:  5'- --gCGCCGGCGCCGGCGccgcccucgcuggcGGCCAGCGc -3'
miRNA:   3'- gagGUGGUUGUGGCCGUu-------------CCGGUCGU- -5'
29451 3' -58 NC_006151.1 + 2349 0.75 0.323055
Target:  5'- gCUCCAgCAGCGCCGcggcgcagaaggcgcGCAAcucGGCCGGCAg -3'
miRNA:   3'- -GAGGUgGUUGUGGC---------------CGUU---CCGGUCGU- -5'
29451 3' -58 NC_006151.1 + 58245 0.75 0.327492
Target:  5'- -gCCGCCAcGCGCCGGCccgcGGGCCgcAGCAc -3'
miRNA:   3'- gaGGUGGU-UGUGGCCGu---UCCGG--UCGU- -5'
29451 3' -58 NC_006151.1 + 5357 0.74 0.334987
Target:  5'- uCUCCgGCgCGGCGCCGGCGGGGCUgucucugcgggGGCGc -3'
miRNA:   3'- -GAGG-UG-GUUGUGGCCGUUCCGG-----------UCGU- -5'
29451 3' -58 NC_006151.1 + 105697 0.74 0.334987
Target:  5'- ---gGCCGACGCCGGCGcGGCCGcGCGc -3'
miRNA:   3'- gaggUGGUUGUGGCCGUuCCGGU-CGU- -5'
29451 3' -58 NC_006151.1 + 19007 0.74 0.342606
Target:  5'- -gCCACCAgccgcgcgcGCGCCGGCGAGGUgaAGCu -3'
miRNA:   3'- gaGGUGGU---------UGUGGCCGUUCCGg-UCGu -5'
29451 3' -58 NC_006151.1 + 10554 0.74 0.350349
Target:  5'- uUCCGcCCGGCGCCcaauGGCGcGGCCGGCu -3'
miRNA:   3'- gAGGU-GGUUGUGG----CCGUuCCGGUCGu -5'
29451 3' -58 NC_006151.1 + 69515 0.74 0.358216
Target:  5'- cCUCCGCCGccGCGCCGcGCGAGGgcgcCCuGCAu -3'
miRNA:   3'- -GAGGUGGU--UGUGGC-CGUUCC----GGuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.