miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29451 5' -58.3 NC_006151.1 + 40395 0.66 0.813
Target:  5'- cCUCcuCCucuGCgUCCGCGGCGgCGGCc- -3'
miRNA:   3'- -GAGu-GGu--UGgAGGCGCCGUgGCUGua -5'
29451 5' -58.3 NC_006151.1 + 96020 0.66 0.813
Target:  5'- -gCACCGccuCCUCgGUGGUGCgCGGCAg -3'
miRNA:   3'- gaGUGGUu--GGAGgCGCCGUG-GCUGUa -5'
29451 5' -58.3 NC_006151.1 + 114134 0.66 0.813
Target:  5'- -gCGCCGccGCCgagCCGCGGCuCgGGCGc -3'
miRNA:   3'- gaGUGGU--UGGa--GGCGCCGuGgCUGUa -5'
29451 5' -58.3 NC_006151.1 + 139668 0.66 0.813
Target:  5'- -gCGCCGcccgacagGCC-CUGCGGCAgCGGCGg -3'
miRNA:   3'- gaGUGGU--------UGGaGGCGCCGUgGCUGUa -5'
29451 5' -58.3 NC_006151.1 + 69456 0.66 0.813
Target:  5'- cCUCGC--GCg-CCGCgGGCGCCGGCAc -3'
miRNA:   3'- -GAGUGguUGgaGGCG-CCGUGGCUGUa -5'
29451 5' -58.3 NC_006151.1 + 101755 0.66 0.813
Target:  5'- -cCGgCGGCCgCCGCGcCGCCGACGc -3'
miRNA:   3'- gaGUgGUUGGaGGCGCcGUGGCUGUa -5'
29451 5' -58.3 NC_006151.1 + 123253 0.66 0.813
Target:  5'- uUCugCGagGCCgCCGCGcGCGCgGGCAc -3'
miRNA:   3'- gAGugGU--UGGaGGCGC-CGUGgCUGUa -5'
29451 5' -58.3 NC_006151.1 + 56946 0.66 0.811262
Target:  5'- gUCGCCGGCgCUCagcgccucgagcgCGCGGUuguacauGCCGACGa -3'
miRNA:   3'- gAGUGGUUG-GAG-------------GCGCCG-------UGGCUGUa -5'
29451 5' -58.3 NC_006151.1 + 59503 0.66 0.804247
Target:  5'- -cCGgCGGCCUCCGCGacgcgcgcgcaGCGCCG-CGUg -3'
miRNA:   3'- gaGUgGUUGGAGGCGC-----------CGUGGCuGUA- -5'
29451 5' -58.3 NC_006151.1 + 129391 0.66 0.804247
Target:  5'- -cCACCAGCuCUggGUGGCGCgCGGCGUa -3'
miRNA:   3'- gaGUGGUUG-GAggCGCCGUG-GCUGUA- -5'
29451 5' -58.3 NC_006151.1 + 111380 0.66 0.804247
Target:  5'- cCUCGCCGucgucGCCgCCGcCGGCACCcccgccggGGCGg -3'
miRNA:   3'- -GAGUGGU-----UGGaGGC-GCCGUGG--------CUGUa -5'
29451 5' -58.3 NC_006151.1 + 39336 0.66 0.804247
Target:  5'- gCUCGCggcuCGGCgCggCGCGGCGCCGGCu- -3'
miRNA:   3'- -GAGUG----GUUG-GagGCGCCGUGGCUGua -5'
29451 5' -58.3 NC_006151.1 + 81529 0.66 0.803364
Target:  5'- gCUCGgCGGCCgcggcggcgcgcUCCGCGGUgcacaugGCCGugGUg -3'
miRNA:   3'- -GAGUgGUUGG------------AGGCGCCG-------UGGCugUA- -5'
29451 5' -58.3 NC_006151.1 + 56183 0.66 0.795341
Target:  5'- uCUCGCUGGCCgugCCGCcgguGGCGCUGccGCAc -3'
miRNA:   3'- -GAGUGGUUGGa--GGCG----CCGUGGC--UGUa -5'
29451 5' -58.3 NC_006151.1 + 57719 0.66 0.795341
Target:  5'- -gCGCCGGCUUgaCCGCGcGCGCCcGCAc -3'
miRNA:   3'- gaGUGGUUGGA--GGCGC-CGUGGcUGUa -5'
29451 5' -58.3 NC_006151.1 + 85654 0.66 0.795341
Target:  5'- -gCGCCcGCCUCgCGCaGCGgCGACGg -3'
miRNA:   3'- gaGUGGuUGGAG-GCGcCGUgGCUGUa -5'
29451 5' -58.3 NC_006151.1 + 93220 0.66 0.795341
Target:  5'- cCUCACC-GCCUCCcacuCuGCGCCGGCc- -3'
miRNA:   3'- -GAGUGGuUGGAGGc---GcCGUGGCUGua -5'
29451 5' -58.3 NC_006151.1 + 109241 0.66 0.795341
Target:  5'- -aC-CCAGCCgCCGCGGUcuccGCUGGCGg -3'
miRNA:   3'- gaGuGGUUGGaGGCGCCG----UGGCUGUa -5'
29451 5' -58.3 NC_006151.1 + 38364 0.66 0.795341
Target:  5'- ---cCCGGCCUCgucgucccagCGcCGGCGCCGGCGg -3'
miRNA:   3'- gaguGGUUGGAG----------GC-GCCGUGGCUGUa -5'
29451 5' -58.3 NC_006151.1 + 5074 0.66 0.795341
Target:  5'- --gGCCGaggGCCgcggggCCGCGGCgggcGCCGGCGg -3'
miRNA:   3'- gagUGGU---UGGa-----GGCGCCG----UGGCUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.