miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29454 5' -59.9 NC_006151.1 + 31960 0.66 0.780252
Target:  5'- -aCGCCGgggacgcgggacgugCC-CGCCGCcugGGAGCCGGc -3'
miRNA:   3'- cgGCGGUa--------------GGaGCGGCG---UCUUGGCCc -5'
29454 5' -59.9 NC_006151.1 + 2915 0.66 0.779356
Target:  5'- aGCCGgCG-CCgCGCCGCGccGAGCCGcGa -3'
miRNA:   3'- -CGGCgGUaGGaGCGGCGU--CUUGGC-Cc -5'
29454 5' -59.9 NC_006151.1 + 39282 0.66 0.779356
Target:  5'- uGCUGCUGcUCUCGgCGCGGGACCu-- -3'
miRNA:   3'- -CGGCGGUaGGAGCgGCGUCUUGGccc -5'
29454 5' -59.9 NC_006151.1 + 58876 0.66 0.779356
Target:  5'- cGCCGgguCCGUCCagGCCGUguAGAucCCGGc -3'
miRNA:   3'- -CGGC---GGUAGGagCGGCG--UCUu-GGCCc -5'
29454 5' -59.9 NC_006151.1 + 131061 0.66 0.779356
Target:  5'- gGCCGUC-UCCaUGCCGCGGA---GGGc -3'
miRNA:   3'- -CGGCGGuAGGaGCGGCGUCUuggCCC- -5'
29454 5' -59.9 NC_006151.1 + 121640 0.66 0.779356
Target:  5'- cGUgGCC-UCuCUCGCgGCGGAcgGgCGGGc -3'
miRNA:   3'- -CGgCGGuAG-GAGCGgCGUCU--UgGCCC- -5'
29454 5' -59.9 NC_006151.1 + 85182 0.66 0.778459
Target:  5'- cGCCGCCGcCC-CGCugggcauCGCGGAccuGCUGGa -3'
miRNA:   3'- -CGGCGGUaGGaGCG-------GCGUCU---UGGCCc -5'
29454 5' -59.9 NC_006151.1 + 78164 0.66 0.776661
Target:  5'- gGCCGCCguggucgaggccguGUCCgccgUCGCgGCGGAccccuucuUCGGGa -3'
miRNA:   3'- -CGGCGG--------------UAGG----AGCGgCGUCUu-------GGCCC- -5'
29454 5' -59.9 NC_006151.1 + 87546 0.66 0.773051
Target:  5'- aGCCGcCCGUCCagGCCucggucucggccccgGCGGAcgucuccGCCGGc -3'
miRNA:   3'- -CGGC-GGUAGGagCGG---------------CGUCU-------UGGCCc -5'
29454 5' -59.9 NC_006151.1 + 68036 0.66 0.770331
Target:  5'- gGCgGCCcgCCggCGCgGCGG-GCaCGGGc -3'
miRNA:   3'- -CGgCGGuaGGa-GCGgCGUCuUG-GCCC- -5'
29454 5' -59.9 NC_006151.1 + 58529 0.66 0.770331
Target:  5'- cUCGUCcUCCUCGCCGCccuccCCGGu -3'
miRNA:   3'- cGGCGGuAGGAGCGGCGucuu-GGCCc -5'
29454 5' -59.9 NC_006151.1 + 99384 0.66 0.770331
Target:  5'- aCCGCC-UCCUCGaCGacuaCGGGcCCGGGc -3'
miRNA:   3'- cGGCGGuAGGAGCgGC----GUCUuGGCCC- -5'
29454 5' -59.9 NC_006151.1 + 22097 0.66 0.770331
Target:  5'- gGCCGCCGgugggccaccgCCUCGUU-CAGcAGCCGGu -3'
miRNA:   3'- -CGGCGGUa----------GGAGCGGcGUC-UUGGCCc -5'
29454 5' -59.9 NC_006151.1 + 117591 0.66 0.770331
Target:  5'- gGCCGCguggCgC-CGCCGCAGuaGACCGuGGg -3'
miRNA:   3'- -CGGCGgua-G-GaGCGGCGUC--UUGGC-CC- -5'
29454 5' -59.9 NC_006151.1 + 50056 0.66 0.769422
Target:  5'- aGCCuGCagauguuUAUCCUgUGCCGCAGAGCCc-- -3'
miRNA:   3'- -CGG-CG-------GUAGGA-GCGGCGUCUUGGccc -5'
29454 5' -59.9 NC_006151.1 + 4382 0.66 0.767601
Target:  5'- gGUCGCC-UCCcCGgCGCGGGGguccgcggcgcggcCCGGGu -3'
miRNA:   3'- -CGGCGGuAGGaGCgGCGUCUU--------------GGCCC- -5'
29454 5' -59.9 NC_006151.1 + 96169 0.66 0.761191
Target:  5'- gGCCaCgCGUCCgaGCCGCAGAGCacgagcgccaUGGGg -3'
miRNA:   3'- -CGGcG-GUAGGagCGGCGUCUUG----------GCCC- -5'
29454 5' -59.9 NC_006151.1 + 90678 0.66 0.761191
Target:  5'- gGCCGCuUGUCCccCGCgGCGGGGgCGGcGg -3'
miRNA:   3'- -CGGCG-GUAGGa-GCGgCGUCUUgGCC-C- -5'
29454 5' -59.9 NC_006151.1 + 86324 0.66 0.761191
Target:  5'- gGCCguGCUcgCCcgCGCCGUGGGcCCGGa -3'
miRNA:   3'- -CGG--CGGuaGGa-GCGGCGUCUuGGCCc -5'
29454 5' -59.9 NC_006151.1 + 58056 0.66 0.761191
Target:  5'- aGCgCGCaguaguaGUCCUCGuCCGCGcccucgcgggcGAGCuCGGGc -3'
miRNA:   3'- -CG-GCGg------UAGGAGC-GGCGU-----------CUUG-GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.