miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29455 3' -56.6 NC_006151.1 + 117250 0.67 0.840547
Target:  5'- cGGCGGGCccgaggcgcGGGcCGcGCGCGgcCGCCGc -3'
miRNA:   3'- -CUGCUCG---------UCCaGCaCGUGCauGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 99505 0.67 0.832298
Target:  5'- cGugGAGCAcGUgGUGCGCcacugcaugGCGCCGc -3'
miRNA:   3'- -CugCUCGUcCAgCACGUGca-------UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 86717 0.67 0.832298
Target:  5'- --gGAGCuGGUCGcgGCGCGc-CGCCGc -3'
miRNA:   3'- cugCUCGuCCAGCa-CGUGCauGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 50162 0.67 0.832298
Target:  5'- cGACGAGC-GGaCGaGCGCGgccggccGCGCCGg -3'
miRNA:   3'- -CUGCUCGuCCaGCaCGUGCa------UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 102089 0.67 0.823867
Target:  5'- cGACGAGCucgAGGagcaCGUGguCGCGUGCGCgGg -3'
miRNA:   3'- -CUGCUCG---UCCa---GCAC--GUGCAUGCGgU- -5'
29455 3' -56.6 NC_006151.1 + 54664 0.67 0.823867
Target:  5'- gGACGAGCAcgaccuGGcCGggcaccUGCGCGU-CGCCGg -3'
miRNA:   3'- -CUGCUCGU------CCaGC------ACGUGCAuGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 82511 0.67 0.823867
Target:  5'- -cCGAGCAGGUgccCGcggaUGCGCGUgucguugaGCGCCc -3'
miRNA:   3'- cuGCUCGUCCA---GC----ACGUGCA--------UGCGGu -5'
29455 3' -56.6 NC_006151.1 + 84708 0.67 0.823867
Target:  5'- aGCG-GCAGGUgGaGCGCGUG-GCCGa -3'
miRNA:   3'- cUGCuCGUCCAgCaCGUGCAUgCGGU- -5'
29455 3' -56.6 NC_006151.1 + 98367 0.67 0.823867
Target:  5'- cGCGGGCucuGGgCGcGCGCGcUGCGCCu -3'
miRNA:   3'- cUGCUCGu--CCaGCaCGUGC-AUGCGGu -5'
29455 3' -56.6 NC_006151.1 + 11690 0.67 0.815261
Target:  5'- cGACGGggccGCGGGaCG-GCGCGUGCGgCGc -3'
miRNA:   3'- -CUGCU----CGUCCaGCaCGUGCAUGCgGU- -5'
29455 3' -56.6 NC_006151.1 + 49491 0.67 0.815261
Target:  5'- gGACuGAGuCGGG-CGUGCGCGcacacCGCCGg -3'
miRNA:   3'- -CUG-CUC-GUCCaGCACGUGCau---GCGGU- -5'
29455 3' -56.6 NC_006151.1 + 51983 0.67 0.814391
Target:  5'- aGGCGAGCAgcuccgcggugccGG-CGUGCAgCuUGCGCCGc -3'
miRNA:   3'- -CUGCUCGU-------------CCaGCACGU-GcAUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 141314 0.67 0.806488
Target:  5'- cGCGGGCGGGUcCGggaugGUcaccGCGUACGCgGg -3'
miRNA:   3'- cUGCUCGUCCA-GCa----CG----UGCAUGCGgU- -5'
29455 3' -56.6 NC_006151.1 + 129110 0.67 0.806488
Target:  5'- cACGAGCgccaGGGcCGagGCGCGcuggGCGCCAa -3'
miRNA:   3'- cUGCUCG----UCCaGCa-CGUGCa---UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 73886 0.68 0.797557
Target:  5'- -uCGAGCAGcguggcGUCGUuggGCugGUAgGCCAu -3'
miRNA:   3'- cuGCUCGUC------CAGCA---CGugCAUgCGGU- -5'
29455 3' -56.6 NC_006151.1 + 75392 0.68 0.797557
Target:  5'- cGGCGcggGGCGGGUgCGUGCGCGgguccgggAgGCCc -3'
miRNA:   3'- -CUGC---UCGUCCA-GCACGUGCa-------UgCGGu -5'
29455 3' -56.6 NC_006151.1 + 131843 0.68 0.797557
Target:  5'- uGAUGAGCGGGgCG-GCcgagACGcGCGCCGg -3'
miRNA:   3'- -CUGCUCGUCCaGCaCG----UGCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 127331 0.68 0.794848
Target:  5'- cGCGGGCGGGg-GUGCugGUAcacguggucggucuCGCCc -3'
miRNA:   3'- cUGCUCGUCCagCACGugCAU--------------GCGGu -5'
29455 3' -56.6 NC_006151.1 + 42964 0.68 0.788476
Target:  5'- ----cGCGGGUCGUGUGCGUGUGCgAg -3'
miRNA:   3'- cugcuCGUCCAGCACGUGCAUGCGgU- -5'
29455 3' -56.6 NC_006151.1 + 17699 0.68 0.788476
Target:  5'- aGACGAGgaAGGcugcugUGUGCGCccggGUGCGCCGg -3'
miRNA:   3'- -CUGCUCg-UCCa-----GCACGUG----CAUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.