Results 41 - 60 of 430 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 102272 | 0.66 | 0.52716 |
Target: 5'- gGGCGCGCu--GCCGGaGCgCGgcCCGGCCg -3' miRNA: 3'- -CCGCGUGcccCGGCC-CGaGC--GGCUGG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 128289 | 0.66 | 0.52716 |
Target: 5'- cGCGCGCaGGuaCGGGUccuccaucccgUCGUCGAgCCa -3' miRNA: 3'- cCGCGUGcCCcgGCCCG-----------AGCGGCU-GG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 131448 | 0.66 | 0.52716 |
Target: 5'- cGGCGgGCGGaaguCCGGGC--GCCGcACCu -3' miRNA: 3'- -CCGCgUGCCcc--GGCCCGagCGGC-UGG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 133162 | 0.66 | 0.52716 |
Target: 5'- cGGCGCggGCGuGGGCCucGGCcacgCGUcccaCGGCCg -3' miRNA: 3'- -CCGCG--UGC-CCCGGc-CCGa---GCG----GCUGG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 129175 | 0.66 | 0.52716 |
Target: 5'- cGuCGCGCaGGGCCGccacGGC-CGCCGucagcACCu -3' miRNA: 3'- cC-GCGUGcCCCGGC----CCGaGCGGC-----UGG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 75251 | 0.66 | 0.52716 |
Target: 5'- aGGCGCAcugcaccucCGcGGGCUccuGGCgcagCGCCG-CCa -3' miRNA: 3'- -CCGCGU---------GC-CCCGGc--CCGa---GCGGCuGG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 64339 | 0.66 | 0.518019 |
Target: 5'- -aCGUcgGCGGGaaGCgCGGGC-CGUCGGCCc -3' miRNA: 3'- ccGCG--UGCCC--CG-GCCCGaGCGGCUGG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 91550 | 0.66 | 0.518019 |
Target: 5'- aGGUGCGCGGccaGCgGGGCgauggcggcgCGCgCGugCu -3' miRNA: 3'- -CCGCGUGCCc--CGgCCCGa---------GCG-GCugG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 21058 | 0.66 | 0.518019 |
Target: 5'- -aCGCGCGGGGUCaGGGCg-GCCa--- -3' miRNA: 3'- ccGCGUGCCCCGG-CCCGagCGGcugg -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 48137 | 0.66 | 0.518019 |
Target: 5'- cGGCGCugGGGGuuCCuGGCa--CCGGCg -3' miRNA: 3'- -CCGCGugCCCC--GGcCCGagcGGCUGg -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 65804 | 0.66 | 0.518019 |
Target: 5'- cGGCGCggacgugccGCGGuGGauGGGCg-GCCGcGCCa -3' miRNA: 3'- -CCGCG---------UGCC-CCggCCCGagCGGC-UGG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 68302 | 0.66 | 0.518019 |
Target: 5'- aGGCGCGCGcccacgacGGCgaGGGCggCGuaGACCu -3' miRNA: 3'- -CCGCGUGCc-------CCGg-CCCGa-GCggCUGG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 71322 | 0.66 | 0.518019 |
Target: 5'- cGGCaaGCGCGGcGGCUGcGC-CGaCGACCu -3' miRNA: 3'- -CCG--CGUGCC-CCGGCcCGaGCgGCUGG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 102553 | 0.66 | 0.518019 |
Target: 5'- cGCGCGCGcGGGCCcuGUUUGCgCGcGCCc -3' miRNA: 3'- cCGCGUGC-CCCGGccCGAGCG-GC-UGG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 127386 | 0.66 | 0.518019 |
Target: 5'- gGGUgGCG-GGGGCCGcGGCcgaGUCGACg -3' miRNA: 3'- -CCG-CGUgCCCCGGC-CCGag-CGGCUGg -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 127844 | 0.66 | 0.518019 |
Target: 5'- cGGCGuCGCGGcugcGCCggaGGGggCGCCGcCCg -3' miRNA: 3'- -CCGC-GUGCCc---CGG---CCCgaGCGGCuGG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 129339 | 0.66 | 0.518019 |
Target: 5'- cGGCcC-CGGGGCgGccGGCgCGCCGAUa -3' miRNA: 3'- -CCGcGuGCCCCGgC--CCGaGCGGCUGg -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 137931 | 0.66 | 0.518019 |
Target: 5'- gGGCGCcugcuccccuuUGGGGacgcgcccCCGGGCuUCGaCGACCc -3' miRNA: 3'- -CCGCGu----------GCCCC--------GGCCCG-AGCgGCUGG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 14637 | 0.66 | 0.518019 |
Target: 5'- -cCGuCGgGGcGGCCGGGCUCGgguCCGGuuCCg -3' miRNA: 3'- ccGC-GUgCC-CCGGCCCGAGC---GGCU--GG- -5' |
|||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 23404 | 0.66 | 0.518019 |
Target: 5'- cGCGC-CaGcGCUGGuGgUCGCCGGCCg -3' miRNA: 3'- cCGCGuGcCcCGGCC-CgAGCGGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home