Results 101 - 120 of 430 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 129497 | 0.67 | 0.456023 |
Target: 5'- gGGCaGCGCGGGcgcgaugacgaGCCGcuuGC-CGCCGACg -3' miRNA: 3'- -CCG-CGUGCCC-----------CGGCc--CGaGCGGCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 91236 | 0.67 | 0.472472 |
Target: 5'- aGGCGaCGCucgGGGaGCCGGGCccCGUCGcgaggacGCCc -3' miRNA: 3'- -CCGC-GUG---CCC-CGGCCCGa-GCGGC-------UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 133222 | 0.67 | 0.472472 |
Target: 5'- aGGCGUGCGucgcgccgcgccaGGGCaCGuuGGcCUCGCaCGGCCu -3' miRNA: 3'- -CCGCGUGC-------------CCCG-GC--CC-GAGCG-GCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 11903 | 0.67 | 0.473347 |
Target: 5'- aGGCGCGuCGGGGUuuuCGcGCccucgCGCCGccGCCg -3' miRNA: 3'- -CCGCGU-GCCCCG---GCcCGa----GCGGC--UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 2601 | 0.67 | 0.473347 |
Target: 5'- aGGCGCGCGgcggcagcGGGaCCGGGgUCcggggcCCGGCg -3' miRNA: 3'- -CCGCGUGC--------CCC-GGCCCgAGc-----GGCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 11236 | 0.67 | 0.473347 |
Target: 5'- gGGC-CGCGaGGGCCGcGGC--GgCGACCc -3' miRNA: 3'- -CCGcGUGC-CCCGGC-CCGagCgGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 27236 | 0.67 | 0.473347 |
Target: 5'- cGCGCAccuccuCGGGGUCGGGCgggggC-CCGuACUc -3' miRNA: 3'- cCGCGU------GCCCCGGCCCGa----GcGGC-UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 36190 | 0.67 | 0.473347 |
Target: 5'- -cCGC-CGGGGCuCGGGCgagaUCGUgGugCu -3' miRNA: 3'- ccGCGuGCCCCG-GCCCG----AGCGgCugG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 106793 | 0.67 | 0.473347 |
Target: 5'- uGGC-CGCGGcGG-CGGuGCUCGUCGggGCCc -3' miRNA: 3'- -CCGcGUGCC-CCgGCC-CGAGCGGC--UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 109473 | 0.67 | 0.470727 |
Target: 5'- aGCgGCACGGGGagcccCCGcGGCUcauguucacaccucCGCCGcuGCCg -3' miRNA: 3'- cCG-CGUGCCCC-----GGC-CCGA--------------GCGGC--UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 50437 | 0.67 | 0.464642 |
Target: 5'- uGCGCGcCGGcGGCCuGGGCacCGCCcGCg -3' miRNA: 3'- cCGCGU-GCC-CCGG-CCCGa-GCGGcUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 2307 | 0.67 | 0.464642 |
Target: 5'- cGGCGCcCGGGGUCagcaccagcgGGGCggccucggCGUCGGgCu -3' miRNA: 3'- -CCGCGuGCCCCGG----------CCCGa-------GCGGCUgG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 137125 | 0.67 | 0.456023 |
Target: 5'- gGGCGCGCGacGGCgCGGcGCgacgcggCGCCGgagaugGCCg -3' miRNA: 3'- -CCGCGUGCc-CCG-GCC-CGa------GCGGC------UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 28227 | 0.67 | 0.456023 |
Target: 5'- -cCGUcgAgGGGGCCGGGC-CGaCgGGCCc -3' miRNA: 3'- ccGCG--UgCCCCGGCCCGaGC-GgCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 39802 | 0.67 | 0.456023 |
Target: 5'- -cCGCugGGGGCuCGGcGCccCGCugCGGCCc -3' miRNA: 3'- ccGCGugCCCCG-GCC-CGa-GCG--GCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 54723 | 0.67 | 0.456023 |
Target: 5'- uGGaCGa--GGuGGCCGaGCUCGCCGagGCCa -3' miRNA: 3'- -CC-GCgugCC-CCGGCcCGAGCGGC--UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 99151 | 0.67 | 0.456023 |
Target: 5'- cGUGCACGuGGCCGccGC-CGCgGACCu -3' miRNA: 3'- cCGCGUGCcCCGGCc-CGaGCGgCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 112032 | 0.67 | 0.456023 |
Target: 5'- cGGCGggaGCuGGGGCCggcGGGCgggCGgCGGCg -3' miRNA: 3'- -CCGCg--UG-CCCCGG---CCCGa--GCgGCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 139565 | 0.67 | 0.462048 |
Target: 5'- cGGCGCcCGGuccgcgagcGCCuGGGCUCGCgcccccccgagcggCGGCCc -3' miRNA: 3'- -CCGCGuGCCc--------CGG-CCCGAGCG--------------GCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 38208 | 0.67 | 0.464642 |
Target: 5'- aGCGUggACGGGGCCcgcgcccgcGaGGC-CGCCugGACCu -3' miRNA: 3'- cCGCG--UGCCCCGG---------C-CCGaGCGG--CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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