miRNA display CGI


Results 121 - 140 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 36190 0.67 0.473347
Target:  5'- -cCGC-CGGGGCuCGGGCgagaUCGUgGugCu -3'
miRNA:   3'- ccGCGuGCCCCG-GCCCG----AGCGgCugG- -5'
29458 3' -65.5 NC_006151.1 + 106793 0.67 0.473347
Target:  5'- uGGC-CGCGGcGG-CGGuGCUCGUCGggGCCc -3'
miRNA:   3'- -CCGcGUGCC-CCgGCC-CGAGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 110144 0.67 0.473347
Target:  5'- uGCGCGCcaccggacucGGGGCCcuGGCccugcucaUCGCCGcguGCCg -3'
miRNA:   3'- cCGCGUG----------CCCCGGc-CCG--------AGCGGC---UGG- -5'
29458 3' -65.5 NC_006151.1 + 139565 0.67 0.462048
Target:  5'- cGGCGCcCGGuccgcgagcGCCuGGGCUCGCgcccccccgagcggCGGCCc -3'
miRNA:   3'- -CCGCGuGCCc--------CGG-CCCGAGCG--------------GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 112032 0.67 0.456023
Target:  5'- cGGCGggaGCuGGGGCCggcGGGCgggCGgCGGCg -3'
miRNA:   3'- -CCGCg--UG-CCCCGG---CCCGa--GCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 99151 0.67 0.456023
Target:  5'- cGUGCACGuGGCCGccGC-CGCgGACCu -3'
miRNA:   3'- cCGCGUGCcCCGGCc-CGaGCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 90663 0.67 0.44749
Target:  5'- -aUGCGCGGGGCggCGGGC-CGCUuguCCc -3'
miRNA:   3'- ccGCGUGCCCCG--GCCCGaGCGGcu-GG- -5'
29458 3' -65.5 NC_006151.1 + 97629 0.67 0.44749
Target:  5'- cGGCGCGCGGccaugucGuuGGuGCgCGCCG-CCu -3'
miRNA:   3'- -CCGCGUGCCc------CggCC-CGaGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 118059 0.67 0.44749
Target:  5'- cGCGcCGCGccGCUGGGCUacguguacgugaCGCCGAUCg -3'
miRNA:   3'- cCGC-GUGCccCGGCCCGA------------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 58282 0.67 0.44749
Target:  5'- cGCGCACgucaaaGGGGUCGcucaucucgccccGGCguuucagcggcggcgCGCCGGCCu -3'
miRNA:   3'- cCGCGUG------CCCCGGC-------------CCGa--------------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 58659 0.67 0.456023
Target:  5'- aGgGCGCGGcGCaGGGC-CGCCauGACCg -3'
miRNA:   3'- cCgCGUGCCcCGgCCCGaGCGG--CUGG- -5'
29458 3' -65.5 NC_006151.1 + 10663 0.67 0.456023
Target:  5'- aGGCgGCGgGGGaGCgCGGaGCgCGCCGcCCc -3'
miRNA:   3'- -CCG-CGUgCCC-CG-GCC-CGaGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 43936 0.67 0.456023
Target:  5'- aGgGagaGGGGCCGGGggccCUCcCCGGCCg -3'
miRNA:   3'- cCgCgugCCCCGGCCC----GAGcGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 100481 0.67 0.456023
Target:  5'- aGGCGCugGGccugcaGGCgcccguguucCGGacGCUgugCGCCGACCa -3'
miRNA:   3'- -CCGCGugCC------CCG----------GCC--CGA---GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 129497 0.67 0.456023
Target:  5'- gGGCaGCGCGGGcgcgaugacgaGCCGcuuGC-CGCCGACg -3'
miRNA:   3'- -CCG-CGUGCCC-----------CGGCc--CGaGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 137125 0.67 0.456023
Target:  5'- gGGCGCGCGacGGCgCGGcGCgacgcggCGCCGgagaugGCCg -3'
miRNA:   3'- -CCGCGUGCc-CCG-GCC-CGa------GCGGC------UGG- -5'
29458 3' -65.5 NC_006151.1 + 28227 0.67 0.456023
Target:  5'- -cCGUcgAgGGGGCCGGGC-CGaCgGGCCc -3'
miRNA:   3'- ccGCG--UgCCCCGGCCCGaGC-GgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 39802 0.67 0.456023
Target:  5'- -cCGCugGGGGCuCGGcGCccCGCugCGGCCc -3'
miRNA:   3'- ccGCGugCCCCG-GCC-CGa-GCG--GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 54723 0.67 0.456023
Target:  5'- uGGaCGa--GGuGGCCGaGCUCGCCGagGCCa -3'
miRNA:   3'- -CC-GCgugCC-CCGGCcCGAGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 72065 0.68 0.414275
Target:  5'- cGGCGCGCGccaccacccGcGCCGucaGCUCGCgGGCCu -3'
miRNA:   3'- -CCGCGUGC---------CcCGGCc--CGAGCGgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.