miRNA display CGI


Results 141 - 160 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 131733 0.68 0.406211
Target:  5'- aGGCGgggugGCGGGcCCGGGCgaGgCGACCg -3'
miRNA:   3'- -CCGCg----UGCCCcGGCCCGagCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 65700 0.68 0.406211
Target:  5'- gGGCGCgggaucagguAgGGGGCCucgcgcGGCUgCGCgCGGCCc -3'
miRNA:   3'- -CCGCG----------UgCCCCGGc-----CCGA-GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 58508 0.68 0.406211
Target:  5'- cGCGCGC-GGGCCGGcCUCGUccuCGuCCu -3'
miRNA:   3'- cCGCGUGcCCCGGCCcGAGCG---GCuGG- -5'
29458 3' -65.5 NC_006151.1 + 109551 0.68 0.406211
Target:  5'- aGGCGCcguggACGuGGCCcgagccgaGGGaCUCuGCCGGCCc -3'
miRNA:   3'- -CCGCG-----UGCcCCGG--------CCC-GAG-CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 81451 0.68 0.406211
Target:  5'- cGGCGCACGGcGagaggacgucgaGCaggcugaaGGGCUCGUuccacgCGGCCg -3'
miRNA:   3'- -CCGCGUGCC-C------------CGg-------CCCGAGCG------GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 81273 0.68 0.406211
Target:  5'- aGCGCcucgGCGGGGaucuCGGGCgcggcgCGCgCGACg -3'
miRNA:   3'- cCGCG----UGCCCCg---GCCCGa-----GCG-GCUGg -5'
29458 3' -65.5 NC_006151.1 + 65959 0.68 0.406211
Target:  5'- --aGCGCGGccgcgucgucGaGCCGGucCUCGCCGGCCg -3'
miRNA:   3'- ccgCGUGCC----------C-CGGCCc-GAGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 133393 0.68 0.40541
Target:  5'- cGGCgGC-CGGGGCCGagcgggcggucuuGGC-CGCgGACg -3'
miRNA:   3'- -CCG-CGuGCCCCGGC-------------CCGaGCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 21443 0.68 0.411845
Target:  5'- cGGCGUggGGuGGCCcccGGCggcguggucccgcgUCGCCGGCUc -3'
miRNA:   3'- -CCGCGugCC-CCGGc--CCG--------------AGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 46567 0.68 0.413464
Target:  5'- aGGCGCuccccgcGCaGGGCCcgacGGGCg-GCCGugCu -3'
miRNA:   3'- -CCGCG-------UGcCCCGG----CCCGagCGGCugG- -5'
29458 3' -65.5 NC_006151.1 + 28263 0.68 0.414275
Target:  5'- gGGCcucaCACGuGGGCCccGGGgaCGCgGGCCc -3'
miRNA:   3'- -CCGc---GUGC-CCCGG--CCCgaGCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 72065 0.68 0.414275
Target:  5'- cGGCGCGCGccaccacccGcGCCGucaGCUCGCgGGCCu -3'
miRNA:   3'- -CCGCGUGC---------CcCGGCc--CGAGCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 41497 0.68 0.414275
Target:  5'- uGGCGCGagGGGaGCCaaugGGGCgggCGCCGcggagcggaaGCCc -3'
miRNA:   3'- -CCGCGUg-CCC-CGG----CCCGa--GCGGC----------UGG- -5'
29458 3' -65.5 NC_006151.1 + 5616 0.68 0.414275
Target:  5'- cGGCGgAgGGGgcgccgccgccGCCGGGCgccgaGaCCGGCCc -3'
miRNA:   3'- -CCGCgUgCCC-----------CGGCCCGag---C-GGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 122952 0.68 0.414275
Target:  5'- cGGCGcCGCGGGG--GGcGCggaCGCCGGCg -3'
miRNA:   3'- -CCGC-GUGCCCCggCC-CGa--GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 99665 0.68 0.414275
Target:  5'- cGCGCGCagagccgcuGGGGCCu-GCgCGCCGACg -3'
miRNA:   3'- cCGCGUG---------CCCCGGccCGaGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 89129 0.68 0.414275
Target:  5'- gGGCG-GCGGGaCCGGGggCGUCGAgaCCg -3'
miRNA:   3'- -CCGCgUGCCCcGGCCCgaGCGGCU--GG- -5'
29458 3' -65.5 NC_006151.1 + 38269 0.68 0.414275
Target:  5'- cGGCcaACGuGGCCGcggcccGGCUCGCCGagGCCg -3'
miRNA:   3'- -CCGcgUGCcCCGGC------CCGAGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 78398 0.68 0.414275
Target:  5'- cGGC-CACGGcGGCucuCGGGCcgcgagCGCCGugGCCc -3'
miRNA:   3'- -CCGcGUGCC-CCG---GCCCGa-----GCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 84756 0.68 0.40541
Target:  5'- cGGCGCGCGccGCCGaggaggcggacgcGGCgcgCGCCG-CCg -3'
miRNA:   3'- -CCGCGUGCccCGGC-------------CCGa--GCGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.