miRNA display CGI


Results 41 - 60 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 5366 0.75 0.133066
Target:  5'- cGGCGCcgGCGGGGCUgucucugcggGGGCgcccCGCCGuCCc -3'
miRNA:   3'- -CCGCG--UGCCCCGG----------CCCGa---GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 123910 0.75 0.146472
Target:  5'- cGGCGCggcggccgugACGcGGGCCGccucGGcCUCGCCGACg -3'
miRNA:   3'- -CCGCG----------UGC-CCCGGC----CC-GAGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 96388 0.75 0.150011
Target:  5'- cGCGCGCGGuGCCGGcGCaCGgCGGCCg -3'
miRNA:   3'- cCGCGUGCCcCGGCC-CGaGCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 135092 0.75 0.133066
Target:  5'- gGGCG-GCGGGGCCGGGCg-GgCGGCg -3'
miRNA:   3'- -CCGCgUGCCCCGGCCCGagCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 20141 0.75 0.146472
Target:  5'- gGGCGcCGCGGGGgCGGcGCguggacCGCCgGGCCg -3'
miRNA:   3'- -CCGC-GUGCCCCgGCC-CGa-----GCGG-CUGG- -5'
29458 3' -65.5 NC_006151.1 + 3966 0.75 0.146472
Target:  5'- gGGcCGCGCGGcGGCCucGGCgaGCCGGCCg -3'
miRNA:   3'- -CC-GCGUGCC-CCGGc-CCGagCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 4317 0.75 0.136308
Target:  5'- cGGgGCACGcGGCCGGGCUgCGCggCGGCg -3'
miRNA:   3'- -CCgCGUGCcCCGGCCCGA-GCG--GCUGg -5'
29458 3' -65.5 NC_006151.1 + 137006 0.75 0.133066
Target:  5'- cGCGCACGGcGCUGGGCgcccUGCuCGGCCu -3'
miRNA:   3'- cCGCGUGCCcCGGCCCGa---GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 21509 0.75 0.133066
Target:  5'- gGGCGuCAcCGGGG-CGGGCUCGggcuUCGGCCg -3'
miRNA:   3'- -CCGC-GU-GCCCCgGCCCGAGC----GGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 122385 0.74 0.153627
Target:  5'- aGGCGCGcCGcGGGCgcgcgcuggCGGcGCUCGCCG-CCg -3'
miRNA:   3'- -CCGCGU-GC-CCCG---------GCC-CGAGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 56913 0.74 0.175786
Target:  5'- cGGCGUguauguaaacacaaAUGGcGGCgGGGCgUCGCCGGCg -3'
miRNA:   3'- -CCGCG--------------UGCC-CCGgCCCG-AGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 81589 0.74 0.172919
Target:  5'- cGCGCGCGucGCCgGGGC-CGCCGGCg -3'
miRNA:   3'- cCGCGUGCccCGG-CCCGaGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 22822 0.74 0.172919
Target:  5'- aGGUGCAgGGGGCgCGaGGCgagcgCGCUGcCCa -3'
miRNA:   3'- -CCGCGUgCCCCG-GC-CCGa----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 18693 0.74 0.153627
Target:  5'- gGGCGCGCGGGcggcGCCGGcGUcgugaCGCCGuCCa -3'
miRNA:   3'- -CCGCGUGCCC----CGGCC-CGa----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 64498 0.74 0.153627
Target:  5'- cGgGCGCGGGcGgCGGGCgcgCGCCG-CCa -3'
miRNA:   3'- cCgCGUGCCC-CgGCCCGa--GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 134761 0.74 0.172919
Target:  5'- cGCGCGCGGGGcCCGcGGCUUcgGCUccacgGGCCu -3'
miRNA:   3'- cCGCGUGCCCC-GGC-CCGAG--CGG-----CUGG- -5'
29458 3' -65.5 NC_006151.1 + 103029 0.74 0.177028
Target:  5'- aGCGCcuCGGGGCCuGGUUCGCgcugcUGGCCg -3'
miRNA:   3'- cCGCGu-GCCCCGGcCCGAGCG-----GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 71091 0.74 0.177028
Target:  5'- cGGCGC-CGcGGGCgCGGGC--GCCGugCg -3'
miRNA:   3'- -CCGCGuGC-CCCG-GCCCGagCGGCugG- -5'
29458 3' -65.5 NC_006151.1 + 82617 0.74 0.168895
Target:  5'- cGCGCGCGGGcGCCGcGGUgggCGCgGgACCc -3'
miRNA:   3'- cCGCGUGCCC-CGGC-CCGa--GCGgC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 69287 0.74 0.153627
Target:  5'- cGGCGCGCcaccaGGGacaCGGGC-CGCCGGCg -3'
miRNA:   3'- -CCGCGUGc----CCCg--GCCCGaGCGGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.