miRNA display CGI


Results 81 - 100 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 8968 0.73 0.185508
Target:  5'- cGCGCGCGccccgggaaGGGUCGGGCgauggcCGCCG-CCa -3'
miRNA:   3'- cCGCGUGC---------CCCGGCCCGa-----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 135466 0.73 0.200745
Target:  5'- aGGUGCGCGccagcguguccgcgcGGGCCaGGCggCGCgCGGCCu -3'
miRNA:   3'- -CCGCGUGC---------------CCCGGcCCGa-GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 17822 0.73 0.185508
Target:  5'- gGGCGCgGCGGGG-CGGGCg-GCC-ACCa -3'
miRNA:   3'- -CCGCG-UGCCCCgGCCCGagCGGcUGG- -5'
29458 3' -65.5 NC_006151.1 + 5868 0.73 0.198898
Target:  5'- aGCGCcCGGGGCCgccggGGGC-C-CCGGCCu -3'
miRNA:   3'- cCGCGuGCCCCGG-----CCCGaGcGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 84384 0.73 0.198898
Target:  5'- cGGCGCGCGGGGaCGGGCggggaGCgGGu- -3'
miRNA:   3'- -CCGCGUGCCCCgGCCCGag---CGgCUgg -5'
29458 3' -65.5 NC_006151.1 + 92141 0.73 0.182927
Target:  5'- cGCGCGCGGcgccaaggccaucauGGCCGcGGCcgugcgCGCCGACg -3'
miRNA:   3'- cCGCGUGCC---------------CCGGC-CCGa-----GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 98360 0.73 0.194343
Target:  5'- gGGCGUGCGcGGGCUcuGGGCgcgcgcgcugCGCCuGGCCu -3'
miRNA:   3'- -CCGCGUGC-CCCGG--CCCGa---------GCGG-CUGG- -5'
29458 3' -65.5 NC_006151.1 + 118171 0.73 0.181224
Target:  5'- uGGUGCGCGGccugaccgucgaGGCCGGcUUCGCCGGgCa -3'
miRNA:   3'- -CCGCGUGCC------------CCGGCCcGAGCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 103537 0.73 0.181224
Target:  5'- cGGCGCGCugguGGGcGCCGGGCa-GCCGcUCg -3'
miRNA:   3'- -CCGCGUG----CCC-CGGCCCGagCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 21546 0.73 0.185508
Target:  5'- cGGgGC-CGGGGCCuGGGCcUCGgCGAgCCc -3'
miRNA:   3'- -CCgCGuGCCCCGG-CCCG-AGCgGCU-GG- -5'
29458 3' -65.5 NC_006151.1 + 135119 0.73 0.194343
Target:  5'- aGCGCGCGGGG-CGGGCUgGgCGGg- -3'
miRNA:   3'- cCGCGUGCCCCgGCCCGAgCgGCUgg -5'
29458 3' -65.5 NC_006151.1 + 29473 0.72 0.208286
Target:  5'- gGGCGCGCcGGGagaggaaaGGGCgCGCUGGCCu -3'
miRNA:   3'- -CCGCGUGcCCCgg------CCCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 57590 0.72 0.208286
Target:  5'- aGGCGCACGugaccaGGCCGGcCUCGgCCGcgGCCg -3'
miRNA:   3'- -CCGCGUGCc-----CCGGCCcGAGC-GGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 125242 0.72 0.218054
Target:  5'- cGGCGCucccccggcccgGCGGGGacgcCCGaGC-CGCCGGCCg -3'
miRNA:   3'- -CCGCG------------UGCCCC----GGCcCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 46716 0.72 0.218054
Target:  5'- uGGUGCcucgGGGGCCGGG---GCCGGCCc -3'
miRNA:   3'- -CCGCGug--CCCCGGCCCgagCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 118226 0.72 0.218054
Target:  5'- gGGCGCcCGGaccaCCGGGCUCGgCGGCg -3'
miRNA:   3'- -CCGCGuGCCcc--GGCCCGAGCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 68267 0.72 0.218054
Target:  5'- cGGCGacgguCGCGGcGCCGGGCgccaCGgCGGCCa -3'
miRNA:   3'- -CCGC-----GUGCCcCGGCCCGa---GCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 3383 0.72 0.220054
Target:  5'- aGGCG-GCGaGGGCCgccucggaGGGCcgcggcgugugggucUCGCCGGCCg -3'
miRNA:   3'- -CCGCgUGC-CCCGG--------CCCG---------------AGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 92659 0.72 0.22207
Target:  5'- aGGCGCucgcccugcugcCGGcGGCCGGggacgcgcGCUCGCCGcgcGCCg -3'
miRNA:   3'- -CCGCGu-----------GCC-CCGGCC--------CGAGCGGC---UGG- -5'
29458 3' -65.5 NC_006151.1 + 57500 0.72 0.223084
Target:  5'- cGCGCACGcgcucGGCCGcGGCggCGgCGGCCg -3'
miRNA:   3'- cCGCGUGCc----CCGGC-CCGa-GCgGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.